Cai Ling, Rogers Thomas J, Mousavi Jafarabad Reza, Vu Hieu, Yang Chendong, Novaresi Nicole, Galán-Cobo Ana, Girard Luc, Ostrin Edwin J, Fahrmann Johannes F, Kim Jiyeon, Heymach John V, O'Donnell Kathryn A, Xiao Guanghua, Xie Yang, DeBerardinis Ralph J, Minna John D
Children's Research Institute, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.
Quantitative Biomedical Research Center, Peter O'Donnell Jr. School of Public Health, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.
Cancers (Basel). 2025 May 16;17(10):1681. doi: 10.3390/cancers17101681.
We aimed to discover genes with bimodal expression linked to patient outcomes, to reveal underlying oncogenotypes and identify new therapeutic insights in lung adenocarcinoma (LUAD). We performed meta-analysis to screen LUAD datasets for prognostic genes with bimodal expression patterns. Kynureninase (KYNU), a key enzyme in tryptophan catabolism, emerged as a top candidate. We then examined its relationship with LUAD mutations, metabolic alterations, immune microenvironment states, and expression patterns in human and mouse models using bulk and single-cell transcriptomics, metabolomics, and preclinical model datasets. Pan-cancer prognostic associations were also assessed. Model-based clustering of expression outperformed median-based dichotomization in prognostic accuracy. was elevated in tumors with and co-mutations but remained a strong independent prognostic marker. Metabolomic analysis showed that -high tumors had increased anthranilic acid, a catalytic product, while maintaining stable kynurenine levels, suggesting a compensatory mechanism sustaining immunosuppressive signaling. Single-cell and bulk data showed expression was cancer cell-intrinsic in immune-cold tumors and myeloid-derived in immune-infiltrated tumors. In murine LUAD models, expression was predominantly immune-derived and uncoupled from Nrf2/Lkb1 signaling, indicating poor model fidelity. 's prognostic associations extended across cancer types, with poor outcomes in pancreatic and kidney cancers but favorable outcomes in melanoma, underscoring the need for lineage-specific considerations in therapy development. is a robust prognostic biomarker and potential immunometabolic target in LUAD, especially in and co-mutated tumors. Its cancer cell-intrinsic expression and immunosuppressive metabolic phenotype offer translational potential, though species-specific expression patterns pose challenges for preclinical modeling.
我们旨在发现与患者预后相关的双峰表达基因,揭示潜在的肿瘤基因型,并确定肺腺癌(LUAD)的新治疗见解。我们进行了荟萃分析,以筛选具有双峰表达模式的LUAD数据集以寻找预后基因。犬尿氨酸酶(KYNU)是色氨酸分解代谢中的关键酶,成为顶级候选基因。然后,我们使用批量和单细胞转录组学、代谢组学和临床前模型数据集,研究了其与LUAD突变、代谢改变、免疫微环境状态以及人类和小鼠模型中的表达模式之间的关系。还评估了泛癌预后关联。基于模型的表达聚类在预后准确性方面优于基于中位数的二分法。在伴有 和 共突变的肿瘤中 升高,但仍然是一个强大的独立预后标志物。代谢组学分析表明, 高的肿瘤中催化产物邻氨基苯甲酸增加,同时犬尿氨酸水平保持稳定,这表明存在维持免疫抑制信号的补偿机制。单细胞和批量数据显示,在免疫冷肿瘤中 表达是癌细胞内在的,而在免疫浸润肿瘤中是髓系来源的。在小鼠LUAD模型中, 表达主要是免疫来源的,并且与Nrf2/Lkb1信号传导解偶联,表明模型保真度较差。 的预后关联扩展到多种癌症类型,在胰腺癌和肾癌中预后较差,但在黑色素瘤中预后良好,这突出了在治疗开发中考虑谱系特异性的必要性。 在LUAD中是一个强大的预后生物标志物和潜在的免疫代谢靶点,尤其是在伴有 和 共突变的肿瘤中。其癌细胞内在表达和免疫抑制代谢表型具有转化潜力,尽管物种特异性表达模式对临床前建模提出了挑战。