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基于线粒体全基因组序列的(十足目:短尾亚目:地蟹科)地蟹属分子系统发育与进化研究

Molecular Phylogeny and Evolution of the (Decapoda: Brachyura: Gecarcinidae) Genus Based on Whole Mitochondrial Genome Sequences.

作者信息

Wang Zhengfei, Zheng Yuqing, Zhao Xinyue, Xu Xinyi, Xu Zhiwen, Cui Chong

机构信息

Jiangsu Key Laboratory for Bioresources of Saline Soils, Jiangsu Synthetic Innovation Center for Coastal Bio-Agriculture, Jiangsu Provincial Key Laboratory of Coastal Wetland Bioresources and Environmental Protection, School of Wetlands, Yancheng Teachers University, Yancheng 224001, China.

Ministry of Education Key Laboratory of Contemporary Anthropology, Department of Anthropology and Human Genetics, School of Life Sciences, Fudan University, Shanghai 200000, China.

出版信息

Biology (Basel). 2023 Jul 8;12(7):974. doi: 10.3390/biology12070974.

Abstract

is of particular interest because it has been separated, in recent years, from and but studies of its taxonomic status, especially from a whole mitochondrial genome perspective, have been lacking. In this study, the mitogenomes of four species (, , and ) of are sequenced and contrasted with other species in Brachyura for the first time. The phylogenetic tree of Brachyura, which includes 206 crab species (189 species of Brachyuran and 17 Anomura species) with a complete mitogenome, was constructed to evaluate the phylogenetic position of and Gecarcinidae within Brachyuran, and explore the monophyly of Gecarcinidae. Furthermore, two single gene trees based on and separately within interspecies of Gecarcinidae were reconstructed, providing molecular evidence for and further clarifying the division of genera in Gecarcinidae. Based on the mitogenome dataset of 206 crabs, the branch-site model was utilized to explore selective pressure in individual codons with CodeML. The strong selective pressure shown in indicates that it may have played a significant role in the evolution of Gecarcinidae.

摘要

由于近年来它已从[相关物种]中分离出来,因此特别令人感兴趣,但对其分类地位的研究,尤其是从整个线粒体基因组的角度来看,一直缺乏。在本研究中,首次对四种[相关蟹类物种]([具体物种1]、[具体物种2]、[具体物种3]和[具体物种4])的线粒体基因组进行了测序,并与短尾类中的其他物种进行了对比。构建了包括206种蟹类物种(189种短尾类物种和17种异尾类物种)且具有完整线粒体基因组的短尾类系统发育树,以评估[相关物种]和地蟹科在短尾类中的系统发育位置,并探讨地蟹科的单系性。此外,还分别在异齿地蟹属物种间基于[具体基因1]和[具体基因2]重建了两个单基因树,为[相关研究内容]提供了分子证据,并进一步明确了地蟹科属的划分。基于206种蟹类的线粒体基因组数据集,利用分支位点模型通过CodeML探索单个密码子的选择压力。[相关物种]中显示的强烈选择压力表明它可能在地蟹科的进化中发挥了重要作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d1f4/10376310/aea937d6c98c/biology-12-00974-g001.jpg

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