Rossetto Daniele, Nader Serge, Kufner Corinna L, Lozano Gabriella G, Cerofolini Linda, Fragai Marco, Martin-Diaconescu Vlad, Zambelli Barbara, Ciurli Stefano, Guella Graziano, Szabla Rafał, Sasselov Dimitar D, Mansy Sheref S
DiCIBIO, University of Trento 38123 Povo Italy
Department of Chemistry, University of Alberta Edmonton Alberta T6G 2G2 Canada.
Chem Sci. 2025 May 20. doi: 10.1039/d5sc02170g.
The transition from unregulated, prebiotic chemistry to metabolic-like systems capable of supporting an evolving protocell has remained difficult to explain. One hypothesis is that early catalysts began to prune the chemical landscape in a manner that facilitated the emergence of modern-day enzymes. As enzymes frequently rely on the intrinsic reactivity of metal ions, it follows that these early catalysts may have been metal ions coordinated to prebiotic peptides that have remained as core structures within extant proteins. Here, we demonstrate that UV light directly selects for the types of metal-binding peptide motifs found in biology. This is because bare cysteine is much more susceptible to photolysis than cysteine bound by a metal ion. Therefore, peptides with greater affinity for environmentally available metal ions, such as Fe or Zn, are more stable. Our results are supported by mass spectrometry, calorimetry, X-ray absorption, NMR spectroscopy, transient absorption pump probe spectroscopy, and excited-state quantum-chemical calculations. Photostability arises from the ability of the metal ion to engage transiently generated reactive radical centers in a manner that prevents subsequent degradative processes. The data are consistent with the enrichment of a restricted set of high affinity, extant-like metallopeptides in surficial environments on the early Earth.
从无调控的前生物化学向能够支持进化中的原始细胞的类似代谢系统的转变,一直难以解释。一种假说认为,早期催化剂开始以促进现代酶出现的方式修剪化学景观。由于酶常常依赖金属离子的固有反应性,因此这些早期催化剂可能是与前生物肽配位的金属离子,它们作为核心结构保留在现存蛋白质中。在此,我们证明紫外线直接选择生物学中发现的金属结合肽基序类型。这是因为裸半胱氨酸比与金属离子结合的半胱氨酸更容易受到光解作用。因此,对环境中可获得的金属离子(如铁或锌)具有更高亲和力的肽更稳定。我们的结果得到了质谱、量热法、X射线吸收、核磁共振光谱、瞬态吸收泵浦探测光谱和激发态量子化学计算的支持。光稳定性源于金属离子以防止后续降解过程的方式与瞬态产生的反应性自由基中心结合的能力。这些数据与早期地球上表层环境中一组受限的高亲和力、类似现存的金属肽的富集一致。