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pH对蓝藻生物钟体外振荡器的影响。

Effect of pH on the cyanobacterial circadian oscillator in vitro.

作者信息

Ito-Miwa Kumiko, Onoue Yasuhiro, Kondo Takao, Terauchi Kazuki

机构信息

Graduate School of Science and Institute for Advanced Research, Nagoya University, Nagoya, Japan.

College of Life Sciences, Ritsumeikan University, Shiga, Japan.

出版信息

Commun Biol. 2025 May 29;8(1):828. doi: 10.1038/s42003-025-08273-8.

DOI:10.1038/s42003-025-08273-8
PMID:40442319
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12122815/
Abstract

The cyanobacterial clock protein KaiC exhibits robust 24-h oscillation of phosphorylation when incubated with KaiA, KaiB, and ATP in vitro. This study shows that the period of the in vitro phosphorylation rhythm of KaiC was correlated with solution pH, varying from 15 h at pH 6.5-36 h at pH 8.5, without affecting the period's temperature compensation. The solution pH altered the autophosphorylation and autodephosphorylation of KaiC and the effect of KaiB on KaiC but had little effect on its ATPase activity. It also modified the surface charge of the interface between two ATPase domains in KaiC, thereby affecting the autophosphorylation and autodephosphorylation activity of this protein via interdomain communication. These findings not only reveal key biochemical properties of the Kai oscillator but also provide insight into its evolutionary adaptation to environmental changes in cyanobacteria.

摘要

蓝藻生物钟蛋白KaiC在体外与KaiA、KaiB和ATP一起孵育时,表现出强大的24小时磷酸化振荡。本研究表明,KaiC体外磷酸化节律的周期与溶液pH值相关,在pH 6.5时为15小时,在pH 8.5时为36小时,且不影响周期的温度补偿。溶液pH值改变了KaiC的自磷酸化和自去磷酸化以及KaiB对KaiC的影响,但对其ATP酶活性影响很小。它还改变了KaiC中两个ATP酶结构域之间界面的表面电荷,从而通过结构域间通讯影响该蛋白的自磷酸化和自去磷酸化活性。这些发现不仅揭示了Kai振荡器的关键生化特性,还为其在蓝藻中对环境变化的进化适应提供了见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/03db/12122815/29740a3087a7/42003_2025_8273_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/03db/12122815/aa3e2b7c21e4/42003_2025_8273_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/03db/12122815/c0615460ced3/42003_2025_8273_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/03db/12122815/e43bccc826f7/42003_2025_8273_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/03db/12122815/4c77209c1c17/42003_2025_8273_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/03db/12122815/29740a3087a7/42003_2025_8273_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/03db/12122815/aa3e2b7c21e4/42003_2025_8273_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/03db/12122815/c0615460ced3/42003_2025_8273_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/03db/12122815/e43bccc826f7/42003_2025_8273_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/03db/12122815/4c77209c1c17/42003_2025_8273_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/03db/12122815/29740a3087a7/42003_2025_8273_Fig5_HTML.jpg

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2
In vitro regulation of circadian phosphorylation rhythm of cyanobacterial clock protein KaiC by KaiA and KaiB.在体外通过 KaiA 和 KaiB 对蓝藻生物钟蛋白 KaiC 的昼夜磷酸化节律进行调节。
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The ATP-mediated regulation of KaiB-KaiC interaction in the cyanobacterial circadian clock.ATP 介导的蓝藻生物钟中 KaiB-KaiC 相互作用的调节。
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本文引用的文献

1
Evolutionary origins of self-sustained Kai protein circadian oscillators in cyanobacteria.蓝藻中自我维持的Kai蛋白昼夜节律振荡器的进化起源。
Nat Commun. 2025 May 15;16(1):4541. doi: 10.1038/s41467-025-59908-7.
2
Regulation mechanisms of the dual ATPase in KaiC.凯氏蛋白中双ATP酶的调控机制
Proc Natl Acad Sci U S A. 2022 May 10;119(19):e2119627119. doi: 10.1073/pnas.2119627119. Epub 2022 May 4.
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Elucidation of master allostery essential for circadian clock oscillation in cyanobacteria.阐明/master 变构对于蓝细菌生物钟振荡的必要性。
Sci Adv. 2022 Apr 15;8(15):eabm8990. doi: 10.1126/sciadv.abm8990.
4
A luminescent Nanoluc-GFP fusion protein enables readout of cellular pH in photosynthetic organisms.一种发光的 Nanoluc-GFP 融合蛋白可用于读取光合生物中的细胞 pH 值。
J Biol Chem. 2021 Jan-Jun;296:100134. doi: 10.1074/jbc.RA120.016847. Epub 2020 Dec 4.
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Proc Natl Acad Sci U S A. 2020 Aug 25;117(34):20926-20931. doi: 10.1073/pnas.2005496117. Epub 2020 Aug 3.
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Pressure accelerates the circadian clock of cyanobacteria.压力加速了蓝藻的生物钟。
Sci Rep. 2019 Aug 27;9(1):12395. doi: 10.1038/s41598-019-48693-1.
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Magnesium Regulates the Circadian Oscillator in Cyanobacteria.镁调节蓝藻中的生物钟振荡器。
J Biol Rhythms. 2019 Aug;34(4):380-390. doi: 10.1177/0748730419851655. Epub 2019 Jun 20.
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SWISS-MODEL: homology modelling of protein structures and complexes.SWISS-MODEL:蛋白质结构和复合物的同源建模。
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Circadian rhythms. A protein fold switch joins the circadian oscillator to clock output in cyanobacteria.昼夜节律。一种蛋白质折叠开关将蓝藻中的昼夜振荡器与时钟输出连接起来。
Science. 2015 Jul 17;349(6245):324-8. doi: 10.1126/science.1260031. Epub 2015 Jun 25.