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J Inherit Metab Dis. 2025 Jul;48(4):e70045. doi: 10.1002/jimd.70045.
2
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本文引用的文献

1
Coupling metabolomics and exome sequencing reveals graded effects of rare damaging heterozygous variants on gene function and human traits.代谢组学与外显子组测序相结合揭示了罕见有害杂合变异对基因功能和人类性状的分级影响。
Nat Genet. 2025 Jan;57(1):193-205. doi: 10.1038/s41588-024-01965-7. Epub 2025 Jan 2.
2
Rare and common genetic determinants of metabolic individuality and their effects on human health.代谢个体性的罕见和常见遗传决定因素及其对人类健康的影响。
Nat Med. 2022 Nov;28(11):2321-2332. doi: 10.1038/s41591-022-02046-0. Epub 2022 Nov 10.
3
A spectrum of recessiveness among Mendelian disease variants in UK Biobank.英国生物库中孟德尔疾病变异的隐性谱。
Am J Hum Genet. 2022 Jul 7;109(7):1298-1307. doi: 10.1016/j.ajhg.2022.05.008. Epub 2022 May 31.
4
A mitochondrial long-chain fatty acid oxidation defect leads to transfer RNA uncharging and activation of the integrated stress response in the mouse heart.线粒体长链脂肪酸氧化缺陷导致小鼠心脏 tRNA 脱氨和综合应激反应的激活。
Cardiovasc Res. 2022 Dec 29;118(16):3198-3210. doi: 10.1093/cvr/cvac050.
5
Leveraging health systems data to characterize a large effect variant conferring risk for liver disease in Puerto Ricans.利用健康系统数据来描述一个在波多黎各人中赋予肝脏疾病风险的大效应变异。
Am J Hum Genet. 2021 Nov 4;108(11):2099-2111. doi: 10.1016/j.ajhg.2021.09.016. Epub 2021 Oct 21.
6
C5a Activates a Pro-Inflammatory Gene Expression Profile in Human Gaucher iPSC-Derived Macrophages.C5a 在人源 Gaucher iPSC 衍生巨噬细胞中激活促炎基因表达谱。
Int J Mol Sci. 2021 Sep 14;22(18):9912. doi: 10.3390/ijms22189912.
7
Pervasive inflammatory activation in patients with deficiency in very-long-chain acyl-coA dehydrogenase (VLCADD).极长链酰基辅酶A脱氢酶(VLCADD)缺乏患者中普遍存在的炎症激活。
Clin Transl Immunology. 2021 Jun 27;10(6):e1304. doi: 10.1002/cti2.1304. eCollection 2021.
8
Murine deficiency of peroxisomal L-bifunctional protein (EHHADH) causes medium-chain 3-hydroxydicarboxylic aciduria and perturbs hepatic cholesterol homeostasis.鼠源过氧化物酶体 L-双功能蛋白(EHHADH)缺乏导致中链 3-羟二羧酸尿症,并扰乱肝脏胆固醇的体内平衡。
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9
Liver alanine catabolism promotes skeletal muscle atrophy and hyperglycaemia in type 2 diabetes.肝脏丙氨酸分解代谢会促进2型糖尿病患者的骨骼肌萎缩和高血糖症。
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J Clin Invest. 2021 Feb 15;131(4). doi: 10.1172/JCI139496.

一种用于揭示先天性代谢缺陷疾病修饰机制的多组学网络方法。

A Multiomic Network Approach to Uncover Disease Modifying Mechanisms of Inborn Errors of Metabolism.

作者信息

Bender Aaron, Ranea-Robles Pablo, Williams Evan G, Mirzaian Mina, Heimel J Alexander, Levelt Christiaan N, Wanders Ronald J, Aerts Johannes M, Zhu Jun, Auwerx Johan, Houten Sander M, Argmann Carmen A

机构信息

Graduate School of Biomedical Sciences, Icahn School of Medicine at Mount Sinai, New York, New York, USA.

Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, New York, USA.

出版信息

J Inherit Metab Dis. 2025 Jul;48(4):e70045. doi: 10.1002/jimd.70045.

DOI:10.1002/jimd.70045
PMID:40443299
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12129342/
Abstract

For many inborn errors of metabolism (IEM) the understanding of disease mechanisms remains limited, in part explaining their unmet medical needs. The expressivity of IEM disease phenotypes is affected by disease-modifying factors, including rare and common polygenic variation. We hypothesize that we can identify these modulating pathways using molecular signatures of IEM in combination with multiomic data and gene regulatory networks generated from non-IEM animal and human populations. We tested this approach by identifying and subsequently validating glucocorticoid signaling as a candidate modifier of mitochondrial fatty acid oxidation disorders, and recapitulating complement signaling as a modifier of inflammation in Gaucher disease. Our work describes a novel approach that can overcome the rare disease-rare data dilemma and reveal new IEM pathophysiology and potential drug targets using multiomics data in seemingly healthy populations.

摘要

对于许多先天性代谢缺陷病(IEM),对其疾病机制的理解仍然有限,这在一定程度上解释了它们未得到满足的医疗需求。IEM疾病表型的表达受到疾病修饰因子的影响,包括罕见和常见的多基因变异。我们假设,我们可以结合IEM的分子特征与从非IEM动物和人类群体生成的多组学数据及基因调控网络来识别这些调节途径。我们通过识别并随后验证糖皮质激素信号作为线粒体脂肪酸氧化障碍的候选修饰因子,以及重现补体信号作为戈谢病炎症的修饰因子来测试这种方法。我们的工作描述了一种新方法,该方法可以克服罕见病 - 罕见数据的困境,并利用看似健康人群的多组学数据揭示新的IEM病理生理学和潜在药物靶点。