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夏威夷黑珊瑚(角珊瑚目)的完整线粒体基因组对于物种分类分辨率的系统发育信号有限。

Hawaiian black coral (Antipatharia) complete mitochondrial genomes have limited phylogenetic signal for taxonomic resolution of species.

作者信息

Wishingrad Van, Shizuru Leah E K, Takata Kenji, Montgomery Anthony D, Wagner Daniel, Toonen Robert J

机构信息

Hawai'i Institute of Marine Biology, University of Hawaii at Manoa, Kaneohe, Hawai'i, United States.

Graduate School of Agricultural and Life Sciences, University of Tokyo, Tokyo, Yayoi, Japan.

出版信息

PeerJ. 2025 May 30;13:e18731. doi: 10.7717/peerj.18731. eCollection 2025.

DOI:10.7717/peerj.18731
PMID:40458550
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12129002/
Abstract

Most inferences about black coral (Antipatharia) phylogenetics have relied on a handful of molecular markers from PCR-Sanger methods but recently complete mitogenomes are shedding additional light on relationships. We present the most complete survey of shallow-water to mesophotic Hawaiian black corals ('ēkaha kū moana) to date based on complete mitogenome sequences. The phylogenetic relationships inferred from whole-mitochondrial phylogenies recover Myriopathidae as monophyletic with and as the outgroups to all other Hawaiian black coral taxa. Combining our data with other published mitochondrial datasets for black corals, we find that morphologically similar cf. specimens are divergent and may not be conspecifics. Likewise, the genera and (family Antipathidae) include species that are more divergent from one another than they are to other genera in family Aphanipathidae. Overall, data show Myriopathidae is a monophyletic family, but the families Aphanipathidae and Antipathidae are polyphyletic, and the genera and live up to their reputation as a "taxonomic dumping ground". These phylogenetic analyses underscore the need for continued research to understand the evolutionary history and phylogenetic relationships for black corals generally and 'ēkaha kū moana specifically.

摘要

大多数关于黑珊瑚(角珊瑚目)系统发育的推断都依赖于聚合酶链反应-桑格法的少数分子标记,但最近完整的线粒体基因组为其亲缘关系提供了更多线索。我们基于完整的线粒体基因组序列,对浅水至中光层的夏威夷黑珊瑚(“ēkaha kū moana”)进行了迄今为止最全面的调查。从全线粒体系统发育推断出的系统发育关系显示,多枝黑珊瑚科是单系的,以[具体物种1]和[具体物种2]作为所有其他夏威夷黑珊瑚类群的外类群。将我们的数据与其他已发表的黑珊瑚线粒体数据集相结合,我们发现形态相似的[具体物种3] cf. [具体物种4]标本存在差异,可能并非同种。同样,角珊瑚属和[另一属](角珊瑚科)中的物种彼此之间的差异比它们与隐黑珊瑚科中其他属的差异更大。总体而言,数据表明多枝黑珊瑚科是一个单系科,但隐黑珊瑚科和角珊瑚科是多系的,而[上述提到的属]名副其实地成为了一个“分类学倾销地”。这些系统发育分析强调了持续开展研究的必要性,以全面了解黑珊瑚的进化历史和系统发育关系,特别是“ēkaha kū moana”的相关情况。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d857/12129002/610044ed6844/peerj-13-18731-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d857/12129002/75e584d64dbb/peerj-13-18731-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d857/12129002/610044ed6844/peerj-13-18731-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d857/12129002/75e584d64dbb/peerj-13-18731-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d857/12129002/610044ed6844/peerj-13-18731-g002.jpg

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本文引用的文献

1
The complete mitochondrial genome of a species of de Blainville, 1830 from Kaua'i, Hawai'i (Hexacorallia: Antipatharia).来自夏威夷考艾岛的一种1830年德布莱因维尔的完整线粒体基因组(六放珊瑚亚纲:黑珊瑚目)
Mitochondrial DNA B Resour. 2024 Feb 1;9(2):223-226. doi: 10.1080/23802359.2024.2310130. eCollection 2024.
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Bathymetric evolution of black corals through deep time.深海珊瑚的地形演变史。
Proc Biol Sci. 2023 Oct 11;290(2008):20231107. doi: 10.1098/rspb.2023.1107. Epub 2023 Oct 4.
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Synonymization of two, monotypic black-coral-commensal scale worm genera, Pettibone, 1991 and Pettibone, 1969 (Polynoidae, Aphroditiformia).
两个单型黑珊瑚共生多鳞虫属的同义化,佩蒂伯恩,1991年和佩蒂伯恩,1969年(多鳞虫科,海女虫形亚目)
Zookeys. 2023 Sep 1;1178:61-68. doi: 10.3897/zookeys.1178.106101. eCollection 2023.
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Mitochondrial genome comparison reveals the evolution of cnidarians.线粒体基因组比较揭示了刺胞动物的进化。
Ecol Evol. 2023 Jun 13;13(6):e10157. doi: 10.1002/ece3.10157. eCollection 2023 Jun.
5
Description of a new and widely distributed species of (Cnidaria: Anthozoa: Antipatharia: Schizopathidae) previously misidentified as Brook, 1889.描述一个新的和广泛分布的物种(刺胞动物门:珊瑚虫纲:角珊瑚目:裂索珊瑚科),以前被错误地鉴定为布鲁克,1889 年。
PeerJ. 2022 Feb 8;10:e12638. doi: 10.7717/peerj.12638. eCollection 2022.
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New species of deep-sea Antipatharians from the North Pacific (Cnidaria: Anthozoa: Antipatharia), Part 2.北太平洋深海角珊瑚新种(刺胞动物门:珊瑚虫纲:角珊瑚目),第 2 部分。
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Complete mitochondrial genomes of two species of Brook, 1889 (Hexacorallia: Antipatharia: Antipathidae) from Rapa Nui (Easter Island).来自拉帕努伊岛(复活节岛)的1889年布鲁克属(六放珊瑚亚纲:黑珊瑚目:黑珊瑚科)两个物种的完整线粒体基因组。
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