Ronchi Carlos, Ambrosini Giovanna, Hughes Flavia, Flaherty Renée L, Quinn Hazel M, Matvienko Daria, Agnoletto Andrea, Brisken Cathrin
School of Life Sciences, ISREC - Swiss Institute for Experimental Cancer Research, Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne, CH-1015, Switzerland.
Bioinformatics Competence Center, Ecole Polytechnique Fédérale de Lausanne, Lausanne, 1015, Switzerland.
J Mammary Gland Biol Neoplasia. 2025 Jun 3;30(1):9. doi: 10.1007/s10911-025-09583-7.
Time course measurements are used for many applications in biomedical research, ranging from growth curves to drug efficacy testing and high-throughput screening. Statistical methods used to analyze the resulting longitudinal data, such as t-tests or repeated measures ANOVA have limitations when groups are unbalanced, or individual measurements are missing. To address these issues we developed biogrowleR (https://upbri.gitlab.io/biogrowleR/), a workflow to visualize and analyze data based on Frequentist and Bayesian inference combined with hierarchical modeling. By focusing on effect sizes we enhance data interpretation. The workflow further includes a randomization algorithm important to reduce numbers of experimental animals (RRR) and costs. The workflow and R package were designed to be used by researchers with limited experience in R and biostatistics. Our open-source R package biogrowleR contains tutorials, pipelines, and helper functions for the analysis of longitudinal data and enables non computational scientists to perform more effective data analysis.
时间进程测量在生物医学研究中有许多应用,从生长曲线到药物疗效测试和高通量筛选。用于分析所得纵向数据的统计方法,如t检验或重复测量方差分析,在组不平衡或个体测量缺失时存在局限性。为了解决这些问题,我们开发了biogrowleR(https://upbri.gitlab.io/biogrowleR/),这是一个基于频率论和贝叶斯推理并结合层次建模来可视化和分析数据的工作流程。通过关注效应大小,我们增强了数据解释。该工作流程还包括一种随机化算法,这对于减少实验动物数量(RRR)和成本很重要。该工作流程和R包旨在供在R和生物统计学方面经验有限的研究人员使用。我们的开源R包biogrowleR包含用于分析纵向数据的教程、管道和辅助函数,使非计算科学家能够进行更有效的数据分析。