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生物增长分析器:增强纵向数据分析

biogrowleR: Enhancing Longitudinal Data Analysis.

作者信息

Ronchi Carlos, Ambrosini Giovanna, Hughes Flavia, Flaherty Renée L, Quinn Hazel M, Matvienko Daria, Agnoletto Andrea, Brisken Cathrin

机构信息

School of Life Sciences, ISREC - Swiss Institute for Experimental Cancer Research, Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne, CH-1015, Switzerland.

Bioinformatics Competence Center, Ecole Polytechnique Fédérale de Lausanne, Lausanne, 1015, Switzerland.

出版信息

J Mammary Gland Biol Neoplasia. 2025 Jun 3;30(1):9. doi: 10.1007/s10911-025-09583-7.

Abstract

Time course measurements are used for many applications in biomedical research, ranging from growth curves to drug efficacy testing and high-throughput screening. Statistical methods used to analyze the resulting longitudinal data, such as t-tests or repeated measures ANOVA have limitations when groups are unbalanced, or individual measurements are missing. To address these issues we developed biogrowleR (https://upbri.gitlab.io/biogrowleR/), a workflow to visualize and analyze data based on Frequentist and Bayesian inference combined with hierarchical modeling. By focusing on effect sizes we enhance data interpretation. The workflow further includes a randomization algorithm important to reduce numbers of experimental animals (RRR) and costs. The workflow and R package were designed to be used by researchers with limited experience in R and biostatistics. Our open-source R package biogrowleR contains tutorials, pipelines, and helper functions for the analysis of longitudinal data and enables non computational scientists to perform more effective data analysis.

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2e95/12133946/5c29ffbd7247/10911_2025_9583_Fig1_HTML.jpg

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