Department of Biostatistics and Informatics, University of Colorado, Aurora, Colorado, USA.
Animal Model Exp Med. 2022 Sep;5(3):248-257. doi: 10.1002/ame2.12250. Epub 2022 Jun 14.
The consistency of reporting results for patient-derived xenograft (PDX) studies is an area of concern. The PDX method commonly starts by implanting a derivative of a human tumor into a mouse, then comparing the tumor growth under different treatment conditions. Currently, a wide array of statistical methods (e.g., t-test, regression, chi-squared test) are used to analyze these data, which ultimately depend on the outcome chosen (e.g., tumor volume, relative growth, categorical growth). In this simulation study, we provide empirical evidence for the outcome selection process by comparing the performance of both commonly used outcomes and novel variations of common outcomes used in PDX studies. Data were simulated to mimic tumor growth under multiple scenarios, then each outcome of interest was evaluated for 10 000 iterations. Comparisons between different outcomes were made with respect to average bias, variance, type-1 error, and power. A total of 18 continuous, categorical, and time-to-event outcomes were evaluated, with ultimately 2 outcomes outperforming the others: final tumor volume and change in tumor volume from baseline. Notably, the novel variations of the tumor growth inhibition index (TGII)-a commonly used outcome in PDX studies-was found to perform poorly in several scenarios with inflated type-1 error rates and a relatively large bias. Finally, all outcomes of interest were applied to a real-world dataset.
报告患者来源异种移植(PDX)研究结果的一致性是一个令人关注的问题。PDX 方法通常从将人类肿瘤的衍生物植入小鼠开始,然后比较在不同治疗条件下的肿瘤生长情况。目前,广泛使用各种统计方法(例如 t 检验、回归、卡方检验)来分析这些数据,这些方法最终取决于所选择的结果(例如,肿瘤体积、相对生长、分类生长)。在这项模拟研究中,我们通过比较 PDX 研究中常用结果和常见结果的新变体的性能,为结果选择过程提供了经验证据。数据被模拟以模拟多种情况下的肿瘤生长,然后对每个感兴趣的结果进行了 10000 次迭代评估。不同结果之间的比较是基于平均偏差、方差、I 型错误和功效。总共评估了 18 个连续的、分类的和时间到事件的结果,最终有 2 个结果优于其他结果:最终肿瘤体积和肿瘤体积从基线的变化。值得注意的是,在几种情况下,肿瘤生长抑制指数(TGII)的新型变体(PDX 研究中常用的结果)表现不佳,I 型错误率膨胀,相对偏差较大。最后,所有感兴趣的结果都应用于真实数据集。