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通过机器学习识别与年龄相关听力损失的基因特征,并揭示CTSS对小鼠耳蜗的影响。

Identifying a gene signature for age-related hearing loss through machine learning and revealing the effect of the CTSS on the mice cochlea.

作者信息

Jiang Xu, Ke Jing, Liu Yiting, Luo Xiaoqin, Feng Menglong, Mo Hailan, Yuan Wei

机构信息

Department of Otorhinolaryngology-Head and Neck Surgery, Chongqing General Hospital, Chongqing University, No .118, Xingguang Avenue, Liangjiang New Area, Chongqing, 401147, China.

Chongqing Medical University, Chongqing, China.

出版信息

Biogerontology. 2025 Jun 3;26(3):119. doi: 10.1007/s10522-025-10261-8.


DOI:10.1007/s10522-025-10261-8
PMID:40461927
Abstract

Age-related hearing loss (ARHL) is one of the most common health conditions among the elderly population. This study used machine learning to screen for a gene signature to predicts ARHL. Four ARHL mice cochlear transcriptome datasets and the mRNA sequencing of C57BL/6J mice were used for analysis. Machine learning was used to screen for gene signatures closely related to ARHL and validate them. Via qPCR, immunohistochemistry, and immunofluorescence confocal microscopy were used to assess the effect of key gene on the cochlea. The gene signature consisting of 38 genes constructed via Stepglm [forwards] had the best accuracy in the training group, with excellent accuracy and recall in the training and testing groups in predicting ARHL. The gene signature reflected active immune function. CTSS was selected as a key gene on the basis of its association with age and influence hearing loss severity. CTSS showed high expression in ARHL and enriched in the cochlear stria vascularis, which is significantly positively correlated with macrophage marker CD68 expression (R = 0.74, p = 0.006). The gene signature has good accuracy in predicting ARHL. CTSS is highly expressed in the cochleae of ARHL mice and may promote ARHL by inducing macrophage enrichment and causing low-grade inflammation.

摘要

年龄相关性听力损失(ARHL)是老年人群中最常见的健康问题之一。本研究利用机器学习筛选出一种基因特征以预测ARHL。使用了四个ARHL小鼠耳蜗转录组数据集以及C57BL/6J小鼠的mRNA测序进行分析。利用机器学习筛选与ARHL密切相关的基因特征并进行验证。通过qPCR、免疫组织化学和免疫荧光共聚焦显微镜评估关键基因对耳蜗的影响。通过Stepglm[向前]构建的由38个基因组成的基因特征在训练组中具有最佳准确性,在预测ARHL的训练组和测试组中具有出色的准确性和召回率。该基因特征反映了活跃的免疫功能。基于CTSS与年龄的关联及其对听力损失严重程度的影响,将其选为关键基因。CTSS在ARHL中高表达且在耳蜗血管纹中富集,与巨噬细胞标志物CD68表达显著正相关(R = 0.74,p = 0.006)。该基因特征在预测ARHL方面具有良好的准确性。CTSS在ARHL小鼠的耳蜗中高表达,可能通过诱导巨噬细胞富集和引起低度炎症来促进ARHL。

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本文引用的文献

[1]
Advances in Cathepsin S Inhibition: Challenges and Breakthroughs in Drug Development.

Pathophysiology. 2024-9-3

[2]
Macrophage-related immune responses in inner ear: a potential therapeutic target for sensorineural hearing loss.

Front Neurosci. 2024-1-11

[3]
Machine learning-based integrated identification of predictive combined diagnostic biomarkers for endometriosis.

Front Genet. 2023-11-27

[4]
Cochlear inflammaging: cellular and molecular players of the innate and adaptive immune system in age-related hearing loss.

Front Neurol. 2023-11-22

[5]
Construction of predictive model of interstitial fibrosis and tubular atrophy after kidney transplantation with machine learning algorithms.

Front Genet. 2023-11-1

[6]
Potential roles for lncRNA Mirg/Foxp1 in an ARHL model created using C57BL/6J mice.

Hear Res. 2023-10

[7]
Effects of Cathepsin S Inhibition in the Age-Related Dry Eye Phenotype.

Invest Ophthalmol Vis Sci. 2023-8-1

[8]
Cathepsin S (CTSS) activity in health and disease - A treasure trove of untapped clinical potential.

Mol Aspects Med. 2022-12

[9]
Age-Related Hearing Loss Is Accompanied by Chronic Inflammation in the Cochlea and the Cochlear Nucleus.

Front Aging Neurosci. 2022-3-28

[10]
Cochlear Inflammaging in Relation to Ion Channels and Mitochondrial Functions.

Cells. 2021-10-15

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