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一种GATA因子辐射重新连接了内胚层特化网络。

A GATA factor radiation in rewired the endoderm specification network.

作者信息

Darragh Antonia C, Weinstein Rachel, Bloom Jessica R, Rifkin Scott A

机构信息

University of California, San Diego.

出版信息

bioRxiv. 2025 May 12:2022.05.20.492851. doi: 10.1101/2022.05.20.492851.

Abstract

Although similar developmental regulatory networks can produce diverse phenotypes, different networks can also produce the same phenotype. In theory, as long as development can produce an acceptable end phenotype, the details of the process could be shielded from selection, leading to the possibility of developmental system drift, where the developmental mechanisms underlying a stable phenotype continue to evolve. Many examples exist of divergent developmental genetics underlying conserved traits. However, studies that elucidate how these differences arose and how other features of development accommodated them are rarer. In , six transcription factors that bind motifs with a GATA core sequence (GATA factors) comprise the zygotic part of the endoderm specification network. Here we show that the core of this network - five of the genes - originated within the genus during a brief but explosive radiation of this gene family and that at least three of them evolved from a single ancestral gene with at least two different spatio-temporal expression patterns. Based on analyses of their evolutionary history, gene structure, expression, and sequence, we explain how these GATA factors were integrated into this network. Our results show how gene duplication fueled the developmental system drift of the endoderm network in a phylogenetically brief period in developmentally canalized nematodes.

摘要

尽管相似的发育调控网络可以产生多样的表型,但不同的网络也能产生相同的表型。理论上,只要发育能够产生可接受的最终表型,过程的细节就可能免受选择影响,从而导致发育系统漂变的可能性,即稳定表型背后的发育机制持续进化。存在许多保守性状背后发育遗传学存在差异的例子。然而,阐明这些差异如何产生以及发育的其他特征如何适应它们的研究较为少见。在[具体研究中],六个与具有GATA核心序列的基序结合的转录因子(GATA因子)构成了内胚层特化网络合子部分。在此我们表明,这个网络的核心——其中五个基因——在该基因家族短暂但爆发性的辐射期间起源于该属内,并且其中至少三个基因从具有至少两种不同时空表达模式的单个祖先基因进化而来。基于对它们进化历史、基因结构、表达和序列的分析,我们解释了这些GATA因子是如何整合到这个网络中的。我们的结果展示了基因复制如何在发育受限的线虫发育过程中的系统发育短暂时期推动了内胚层网络的发育系统漂变。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1bcc/12132343/7b405b8817ff/nihpp-2022.05.20.492851v3-f0001.jpg

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