Eurmsirilerd Ethan, Maduro Morris F
Undergraduate Program in Biology, Department of Molecular, Cell, and Systems Biology, University of California, Riverside, Riverside, CA 92521, USA.
Department of Molecular, Cell, and Systems Biology, University of California, Riverside, Riverside, CA 92521, USA.
J Dev Biol. 2020 Nov 16;8(4):27. doi: 10.3390/jdb8040027.
GATA transcription factors are found in animals, plants, and fungi. In animals, they have important developmental roles in controlling specification of cell identities and executing tissue-specific differentiation. The Phylum Nematoda is a diverse group of vermiform animals that inhabit ecological niches all over the world. Both free-living and parasitic species are known, including those that cause human infectious disease. To date, GATA factors in nematodes have been studied almost exclusively in the model system and its close relatives. In this study, we use newly available sequences to identify GATA factors across the nematode phylum. We find that most species have fewer than six GATA factors, but some species have 10 or more. Comparisons of gene and protein structure suggest that there were at most two GATA factors at the base of the phylum, which expanded by duplication and modification to result in a core set of four factors. The high degree of structural similarity with the corresponding orthologues in suggests that the nematode GATA factors share similar functions in development.
GATA转录因子存在于动物、植物和真菌中。在动物体内,它们在控制细胞身份特化和执行组织特异性分化方面具有重要的发育作用。线虫门是一类多样的蠕虫状动物,栖息于世界各地的生态位。已知有自由生活和寄生的物种,包括那些会导致人类传染病的物种。迄今为止,对线虫GATA因子的研究几乎完全集中在模式系统及其近亲中。在本研究中,我们利用新获得的序列来鉴定整个线虫门中的GATA因子。我们发现大多数物种的GATA因子少于6个,但有些物种有10个或更多。基因和蛋白质结构的比较表明,在该门的基部最多有两个GATA因子,它们通过复制和修饰而扩展,从而产生了一组核心的四个因子。与相应直系同源物的高度结构相似性表明,线虫GATA因子在发育过程中具有相似的功能。