• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

低氧化态范式与X射线自由电子激光对光系统II中S₃ → [S₄] → S₀转变的观测结果更为一致。

The Low Oxidation State Paradigm is More Consistent with XFEL Observations of the S₃ → [S₄] → S₀ Transition in Photosystem II.

作者信息

Ariafard Alireza, Longhurst Matthew, Swiegers Gerhard F, Stranger Robert

机构信息

Research School of Chemistry, Australian National University, Canberra, Australia.

Intelligent Polymer Research Institute, University of Wollongong, Wollongong, Australia.

出版信息

Chemistry. 2025 Jul 8;31(38):e202501010. doi: 10.1002/chem.202501010. Epub 2025 Jun 18.

DOI:10.1002/chem.202501010
PMID:40465289
Abstract

Photosynthetic water splitting catalyzed by the MnCaO cluster in the oxygen-evolving complex (OEC) of photosystem II (PSII) is crucial for sustaining the supply of oxygen on the Earth. A recent serial femtosecond X-ray crystallography (XFEL) study has provided unprecedented insights into the structural dynamics of the OEC during the S₃ → [S₄] → S₀ transition, revealing that this process involves a peroxide intermediate formed via oxo-oxyl radical coupling between O5 and O. However, computational models based on the high oxidation state (HOS) paradigm have failed to explain key XFEL observations, including the apparent loss of O upon peroxide formation and the largely unchanged Mn4─O5 distance from S₄ to the peroxide intermediate. Here, we apply density functional theory to remodel the S → S transition within the low oxidation state (LOS) paradigm and show that this model yields results more consistent with the XFEL observations. Notably, this study demonstrates that the LOS paradigm can support the formation of an oxyl radical species essential for O─O coupling and subsequent O generation, a capability previously thought to be exclusive to the HOS model. Our findings offer an alternative explanation that complements existing models and broadens our understanding of the OEC mechanism.

摘要

由光系统II(PSII)的放氧复合体(OEC)中的MnCaO簇催化的光合水分解对于维持地球上氧气的供应至关重要。最近的一项飞秒X射线晶体学(XFEL)系列研究为OEC在S₃→[S₄]→S₀转变过程中的结构动力学提供了前所未有的见解,揭示了这一过程涉及通过O5和O之间的氧代-氧自由基偶联形成的过氧化物中间体。然而,基于高氧化态(HOS)范式的计算模型未能解释关键的XFEL观测结果,包括过氧化物形成时O的明显损失以及从S₄到过氧化物中间体的Mn4─O5距离基本不变。在这里,我们应用密度泛函理论在低氧化态(LOS)范式内对S→S转变进行重新建模,并表明该模型产生的结果与XFEL观测结果更一致。值得注意的是,这项研究表明LOS范式可以支持形成对于O─O偶联和随后的O生成至关重要的氧自由基物种,这一能力以前被认为是HOS模型所独有的。我们的发现提供了一种补充现有模型的替代解释,并拓宽了我们对OEC机制的理解。

相似文献

1
The Low Oxidation State Paradigm is More Consistent with XFEL Observations of the S₃ → [S₄] → S₀ Transition in Photosystem II.低氧化态范式与X射线自由电子激光对光系统II中S₃ → [S₄] → S₀转变的观测结果更为一致。
Chemistry. 2025 Jul 8;31(38):e202501010. doi: 10.1002/chem.202501010. Epub 2025 Jun 18.
2
The O-Evolving Complex of Photosystem II: Recent Insights from Quantum Mechanics/Molecular Mechanics (QM/MM), Extended X-ray Absorption Fine Structure (EXAFS), and Femtosecond X-ray Crystallography Data.光系统 II 的 O 演变复合体:来自量子力学/分子力学 (QM/MM)、扩展 X 射线吸收精细结构 (EXAFS) 和飞秒 X 射线晶体学数据的最新见解。
Acc Chem Res. 2017 Jan 17;50(1):41-48. doi: 10.1021/acs.accounts.6b00405. Epub 2016 Dec 21.
3
Comparative Analysis of Natural vs Artificial Mn4Ca-clusters: Structural Insights into O-O Bond Formation in Photosystem II.天然与人工锰钙簇的比较分析:对光系统II中氧-氧键形成的结构洞察
Plant Cell Physiol. 2025 Jun 25. doi: 10.1093/pcp/pcaf067.
4
Probing substrate water access through the O1 channel of Photosystem II by single site mutations and membrane inlet mass spectrometry.通过单点突变和膜进样质谱法探测底物水通过光系统II的O1通道的进入情况。
Photosynth Res. 2025 Apr 22;163(3):28. doi: 10.1007/s11120-025-01147-4.
5
Short-Term Memory Impairment短期记忆障碍
6
Light-induced structural changes and the site of O=O bond formation in PSII caught by XFEL.X 射线自由电子激光捕获 PSII 中光诱导结构变化和 O=O 键形成的位置。
Nature. 2017 Mar 2;543(7643):131-135. doi: 10.1038/nature21400. Epub 2017 Feb 20.
7
Structures and energetics for O2 formation in photosystem II.在光系统 II 中形成 O2 的结构和能量学。
Acc Chem Res. 2009 Dec 21;42(12):1871-80. doi: 10.1021/ar900117k.
8
An oxyl/oxo mechanism for oxygen-oxygen coupling in PSII revealed by an x-ray free-electron laser.X 射线自由电子激光揭示 PSII 中氧-氧耦合的氧化/过氧机制。
Science. 2019 Oct 18;366(6463):334-338. doi: 10.1126/science.aax6998. Epub 2019 Oct 17.
9
PSII Photoinhibition as a Protective Strategy: Maintaining an Oxidative State of PSI by Suppressing PSII Activity Under Environmental Stress.光系统II光抑制作为一种保护策略:在环境胁迫下通过抑制光系统II活性维持光系统I的氧化状态
Physiol Plant. 2025 Jul-Aug;177(4):e70392. doi: 10.1111/ppl.70392.
10
Management of urinary stones by experts in stone disease (ESD 2025).结石病专家对尿路结石的管理(2025年结石病专家共识)
Arch Ital Urol Androl. 2025 Jun 30;97(2):14085. doi: 10.4081/aiua.2025.14085.

本文引用的文献

1
Quantum Chemical Understanding of the O Release Process from Nature's Water Splitting Cofactor.对自然界水分解辅因子中氧释放过程的量子化学理解。
Angew Chem Int Ed Engl. 2025 Apr 17;64(17):e202421383. doi: 10.1002/anie.202421383. Epub 2025 Feb 25.
2
Mechanism of proton release during water oxidation in Photosystem II.光系统II中水氧化过程中质子释放的机制。
Proc Natl Acad Sci U S A. 2024 Dec 24;121(52):e2413396121. doi: 10.1073/pnas.2413396121. Epub 2024 Dec 19.
3
Mechanisms of Mn(V)-Oxo to Mn(IV)-Oxyl Conversion: From Closed-Cubane Photosystem II to Mn(V) Catalysts and the Role of the Entering Ligands.
锰(V)-氧向锰(IV)-氧基转化的机制:从封闭立方烷光系统II到锰(V)催化剂以及进入配体的作用。
Chemistry. 2024 Jun 20;30(35):e202400396. doi: 10.1002/chem.202400396. Epub 2024 Jun 5.
4
Going around the Kok cycle of the water oxidation reaction with femtosecond X-ray crystallography.利用飞秒X射线晶体学研究水氧化反应的Kok循环
IUCrJ. 2023 Nov 1;10(Pt 6):642-655. doi: 10.1107/S2052252523008928.
5
Is There a Different Mechanism for Water Oxidation in Higher Plants?高等植物中是否存在不同的水氧化机制?
J Phys Chem B. 2023 Aug 3;127(30):6643-6647. doi: 10.1021/acs.jpcb.3c03029. Epub 2023 Jul 19.
6
Structural evidence for intermediates during O formation in photosystem II.结构证据表明在光系统 II 中 O 形成过程中的中间体。
Nature. 2023 May;617(7961):629-636. doi: 10.1038/s41586-023-06038-z. Epub 2023 May 3.
7
The electron-proton bottleneck of photosynthetic oxygen evolution.光合作用放氧的电子-质子瓶颈。
Nature. 2023 May;617(7961):623-628. doi: 10.1038/s41586-023-06008-5. Epub 2023 May 3.
8
O-O Bond Formation and Oxygen Release in Photosystem II Are Enhanced by Spin-Exchange and Synergetic Coordination Interactions.O-O 键形成和光系统 II 中的氧气释放通过自旋交换和协同配位相互作用得到增强。
J Chem Theory Comput. 2023 May 9;19(9):2684-2696. doi: 10.1021/acs.jctc.3c00163. Epub 2023 Apr 17.
9
Alternative Mechanism for O Formation in Natural Photosynthesis via Nucleophilic Oxo-Oxo Coupling.通过亲核氧-氧偶联在自然光合作用中形成氧的替代机制。
J Am Chem Soc. 2023 Feb 10. doi: 10.1021/jacs.2c12174.
10
Water oxidation in oxygenic photosynthesis studied by magnetic resonance techniques.利用磁共振技术研究光合放氧中的水氧化
FEBS Lett. 2023 Jan;597(1):6-29. doi: 10.1002/1873-3468.14543. Epub 2022 Dec 2.