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富含脯氨酸的抗菌肽B7-005对ESKAPE+E病原体的作用机制差异及抗菌效力差异

Mechanistic Divergence and Differential Antibacterial Potency of the Proline-Rich Antimicrobial Peptide B7-005 Across ESKAPE + E Pathogens.

作者信息

Di Stasi Adriana, Capolla Sara, Morici Martino, Bozzer Sara, Berger Max, Pacor Sabrina, Pham Thuy Duong, Spurio Roberto, Fabbretti Attilio, Macor Paolo, Wilson Daniel N, Scocchi Marco, Mardirossian Mario

机构信息

Department of Life Sciences, University of Trieste, 34127, Trieste, Italy.

Institute for Biochemistry and Molecular Biology, University of Hamburg, 20146, Hamburg, Germany.

出版信息

Probiotics Antimicrob Proteins. 2025 Jun 5. doi: 10.1007/s12602-025-10568-5.

DOI:10.1007/s12602-025-10568-5
PMID:40471535
Abstract

The urgent need for new antimicrobials is driving the optimization of proline-rich antimicrobial peptides (PrAMPs) as a basis for novel antibiotics to combat multidrug-resistant pathogens. The PrAMP B7-005 has emerged from this process, displaying a broader spectrum of activity compared to similar native PrAMPs and reduced reliance on the bacterial transporter SbmA for its action. While the compatibility and interactions of B7-005 with various mammalian cell types have been investigated, most information on its molecular mechanism of antibacterial action has so far been limited to Escherichia coli. In this study, we investigated the antimicrobial potency and mechanisms of action of B7-005 across the full panel of ESKAPE pathogens, with E. coli included for comparison (ESKAPE + E). The potential of B7-005 to eradicate these pathogens was evaluated in both planktonic and biofilm forms, revealing distinct bactericidal and anti-biofilm effects across the ESKAPE + E pathogens. B7-005's mechanism of action also varied depending on the target microorganism, ranging from intracellular inhibition of protein synthesis without membrane damage to varying levels of membrane permeabilization. Notably, B7-005 consistently inhibited protein synthesis across all ESKAPE + E pathogens, suggesting a possible combination of lytic and non-lytic mechanisms. Furthermore, biochemical analysis of its inhibitory effect on protein synthesis demonstrated that, despite acquiring membrane-destabilizing properties, B7-005 still blocks ribosome progression into the elongation phase, consistent with Class I PrAMPs. B7-005 thus retains the essential characteristics of native PrAMPs while offering a broadened spectrum of activity, highlighting its potential as a lead compound in the development of new antibiotics.

摘要

对抗新型抗菌药物的迫切需求推动了富含脯氨酸的抗菌肽(PrAMPs)的优化,以此作为对抗多重耐药病原体的新型抗生素的基础。PrAMP B7-005就是这一过程的产物,与类似的天然PrAMPs相比,它展现出更广泛的活性谱,且其作用对细菌转运蛋白SbmA的依赖性降低。虽然已经研究了B7-005与各种哺乳动物细胞类型的兼容性和相互作用,但到目前为止,关于其抗菌作用分子机制的大多数信息仅限于大肠杆菌。在本研究中,我们研究了B7-005对所有ESKAPE病原体的抗菌效力和作用机制,并将大肠杆菌纳入比较(ESKAPE + E)。我们评估了B7-005以浮游和生物膜形式根除这些病原体的潜力,结果显示在整个ESKAPE + E病原体中存在明显的杀菌和抗生物膜作用。B7-005的作用机制也因目标微生物而异,范围从无膜损伤的细胞内蛋白质合成抑制到不同程度的膜通透性改变。值得注意的是,B7-005在所有ESKAPE + E病原体中均持续抑制蛋白质合成,这表明可能存在溶菌和非溶菌机制的组合。此外,对其蛋白质合成抑制作用的生化分析表明,尽管B7-005具有膜去稳定特性,但它仍能阻止核糖体进入延伸阶段,这与I类PrAMPs一致。因此,B7-005保留了天然PrAMPs的基本特征,同时提供了更广泛的活性谱,突出了其作为新型抗生素开发中先导化合物的潜力。

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本文引用的文献

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Open Biol. 2024 Dec;14(12):240286. doi: 10.1098/rsob.240286. Epub 2024 Dec 4.
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Accurate structure prediction of biomolecular interactions with AlphaFold 3.利用 AlphaFold 3 进行生物分子相互作用的精确结构预测。
Nature. 2024 Jun;630(8016):493-500. doi: 10.1038/s41586-024-07487-w. Epub 2024 May 8.
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Structural basis for translation inhibition by the glycosylated drosocin peptide.
糖基化的酪丝菌素肽抑制翻译的结构基础。
Nat Chem Biol. 2023 Sep;19(9):1072-1081. doi: 10.1038/s41589-023-01293-7. Epub 2023 Mar 30.
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Biofilms and Their Role in Disease Pathogenesis.生物膜及其在疾病发病机制中的作用。
Front Cell Infect Microbiol. 2022 May 11;12:877995. doi: 10.3389/fcimb.2022.877995. eCollection 2022.
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Peptides as a therapeutic strategy against Klebsiella pneumoniae.肽类作为一种治疗肺炎克雷伯菌的策略。
Trends Pharmacol Sci. 2022 Apr;43(4):335-348. doi: 10.1016/j.tips.2021.12.006. Epub 2022 Jan 22.
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Molecular mechanism of SbmA, a promiscuous transporter exploited by antimicrobial peptides.SbmA的分子机制,一种被抗菌肽利用的多特异性转运蛋白。
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Characterization of Cetacean Proline-Rich Antimicrobial Peptides Displaying Activity against ESKAPE Pathogens.鲸源脯氨酸丰富型抗菌肽的特性研究及其对 ESKAPE 病原体的活性。
Int J Mol Sci. 2020 Oct 6;21(19):7367. doi: 10.3390/ijms21197367.
8
Peptide Inhibitors of Bacterial Protein Synthesis with Broad Spectrum and SbmA-Independent Bactericidal Activity against Clinical Pathogens.具有广谱和 SbmA 非依赖性杀菌活性的细菌蛋白合成肽抑制剂对临床病原体的作用。
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