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基于具有平滑性先验知识的高斯过程回归的对比变化小角中子散射中部分散射函数的增强估计方法。

Enhanced estimation method for partial scattering functions in contrast variation small-angle neutron scattering via Gaussian process regression with prior knowledge of smoothness.

作者信息

Obayashi Ippei, Miyajima Shinya, Tanaka Kazuaki, Mayumi Koichi

机构信息

Center for Artificial Intelligence and Mathematical Data Science, Okayama University, Japan.

Faculty of Science and Engineering, Iwate University, Japan.

出版信息

J Appl Crystallogr. 2025 May 31;58(Pt 3):976-991. doi: 10.1107/S1600576725003334. eCollection 2025 Jun 1.

DOI:10.1107/S1600576725003334
PMID:40475926
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12135983/
Abstract

Contrast variation small-angle neutron scattering (CV-SANS) is a powerful tool for evaluating the structure of multi-component systems. In CV-SANS, the scattering intensities () measured with different scattering contrasts are de-com-posed into partial scattering functions () of the self- and cross-correlations between components. Since the measurement has a measurement error, () must be estimated statistically from (). If no prior knowledge about () is available, the least-squares method is best, and this is the most popular estimation method. However, if prior knowledge is available, the estimation can be improved using Bayesian inference in a statistically authorized way. In this paper, we propose a novel method to improve the estimation of (), based on Gaussian process regression using prior knowledge about the smoothness and flatness of (). We demonstrate the method using synthetic core-shell and experimental polyrotaxane SANS data.

摘要

对比变化小角中子散射(CV-SANS)是评估多组分系统结构的强大工具。在CV-SANS中,用不同散射对比度测量的散射强度()被分解为组分之间自相关和互相关的部分散射函数()。由于测量存在测量误差,()必须从()进行统计估计。如果没有关于()的先验知识,最小二乘法是最好的,这也是最流行的估计方法。然而,如果有先验知识可用,则可以使用贝叶斯推理以统计认可的方式改进估计。在本文中,我们基于利用关于()的平滑度和平面度的先验知识的高斯过程回归,提出了一种改进()估计的新方法。我们使用合成核壳和实验聚轮烷SANS数据演示了该方法。

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本文引用的文献

1
Error evaluation of partial scattering functions obtained from contrast-variation small-angle neutron scattering.由对比变化小角中子散射获得的部分散射函数的误差评估
J Appl Crystallogr. 2025 Feb 1;58(Pt 1):4-17. doi: 10.1107/S1600576724010872.
2
Quantitative selection of sample structures in small-angle scattering using Bayesian methods.使用贝叶斯方法对小角散射中的样本结构进行定量选择。
J Appl Crystallogr. 2024 Jun 18;57(Pt 4):955-965. doi: 10.1107/S1600576724004138. eCollection 2024 Aug 1.
3
The in vivo structure of biological membranes and evidence for lipid domains.
生物膜的体内结构及脂质结构域的证据。
PLoS Biol. 2017 May 23;15(5):e2002214. doi: 10.1371/journal.pbio.2002214. eCollection 2017 May.
4
Preparing monodisperse macromolecular samples for successful biological small-angle X-ray and neutron-scattering experiments.为成功的生物小角 X 射线和中子散射实验制备单分散大分子样品。
Nat Protoc. 2016 Nov;11(11):2122-2153. doi: 10.1038/nprot.2016.113. Epub 2016 Oct 6.
5
Bayesian inference of protein ensembles from SAXS data.基于小角X射线散射数据的蛋白质集合体的贝叶斯推断
Phys Chem Chem Phys. 2016 Feb 17;18(8):5832-8. doi: 10.1039/c5cp04886a.