Wang Jun, Li Zhang, Thomas Holly R, Fan Ke, Thompson Robert G, Ma Yongjie, Crossman David, Yoder Bradley K, Parant John M
Department of Cell, Developmental and Integrative Biology, University of Alabama at Birmingham, Birmingham, AL, USA.
Department of Computer Science, University of Illinois at Chicago, Chicago, IL, USA.
iScience. 2025 May 2;28(6):112558. doi: 10.1016/j.isci.2025.112558. eCollection 2025 Jun 20.
p53 is a transcription factor and important tumor suppressor gene, yet its mechanism of tumor suppression remains unclear. While PUMA/BBC3, NOXA/PMAIP1, and p21/CDKN1A regulate apoptosis and cell-cycle arrest, zebrafish lacking , , and do not develop cancer, suggesting additional p53 targets contribute to tumor suppression. We show that p53 can still induce cell-cycle arrest in the absence of p21, either following DNA damage or mdm2 loss, implicating other transcriptional target in p53-dependent cell-cycle arrest. We conducted a cross-species analysis to identify 137 conserved p53-upregulated genes. Our analysis also stresses the importance of ortholog to paralog analysis across species, since in many cases the paralog but not ortholog in differing species is p53 dependent. Using a CRISPR-Cas9 G0 "crispant" screen in , , , and quadruple knockout zebrafish, we identified , , and that are involved in -dependent cell-cycle arrest.
p53是一种转录因子和重要的肿瘤抑制基因,但其肿瘤抑制机制仍不清楚。虽然PUMA/BBC3、NOXA/PMAIP1和p21/CDKN1A调节细胞凋亡和细胞周期停滞,但缺乏这些基因的斑马鱼不会发生癌症,这表明还有其他p53靶点有助于肿瘤抑制。我们发现,在DNA损伤或mdm2缺失后,即使没有p21,p53仍能诱导细胞周期停滞,这意味着其他转录靶点参与了p53依赖的细胞周期停滞。我们进行了一项跨物种分析,以鉴定137个保守的p53上调基因。我们的分析还强调了跨物种直系同源基因与旁系同源基因分析的重要性,因为在许多情况下,不同物种中的旁系同源基因而非直系同源基因是p53依赖的。通过在p53、p21、PUMA和NOXA四重敲除斑马鱼中进行CRISPR-Cas9 G0“crispant”筛选,我们鉴定出了参与p53依赖的细胞周期停滞的基因。