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从南极沉积物中分离出的一株KK18菌的全基因组显示出与促进植物生长潜力相关的基因。

Complete genome of a sp. KK18 isolated from an Antarctic sediment exhibited genes related to plant growth-promoting potential.

作者信息

Eom So-Yeon, Kim Byeollee, Han So-Ra, Jung Sang-Hee, Kim Yuri, Oh Tae-Jin

机构信息

Department of Life Science and Biochemical Engineering, Graduate School SunMoon University, Asan, South Korea.

Genome-based BioIT Convergence Institute, Asan, South Korea.

出版信息

Microbiol Resour Announc. 2025 Jul 10;14(7):e0016325. doi: 10.1128/mra.00163-25. Epub 2025 Jun 9.

DOI:10.1128/mra.00163-25
PMID:40488496
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12243462/
Abstract

Here, we report the complete genome sequence of sp. KK18, isolated from the Antarctic Ross Sea sediment. The isolate has a genome size of 7.3 Mb, 61% GC content, 100% completeness, and 0.36% contamination. The genome harbors genes associated with plant growth promotion and the biosynthesis of secondary metabolites.

摘要

在此,我们报告了从南极罗斯海沉积物中分离出的sp. KK18的完整基因组序列。该分离株的基因组大小为7.3 Mb,GC含量为61%,完整性为100%,污染率为0.36%。该基因组含有与植物生长促进和次生代谢物生物合成相关的基因。

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本文引用的文献

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2
Assembling the perfect bacterial genome using Oxford Nanopore and Illumina sequencing.利用牛津纳米孔测序和Illumina测序组装完美的细菌基因组。
PLoS Comput Biol. 2023 Mar 2;19(3):e1010905. doi: 10.1371/journal.pcbi.1010905. eCollection 2023 Mar.
3
Application of Psychrotolerant Antarctic Bacteria and Their Metabolites as Efficient Plant Growth Promoting Agents.耐冷南极细菌及其代谢产物作为高效植物生长促进剂的应用
Front Bioeng Biotechnol. 2022 Feb 24;10:772891. doi: 10.3389/fbioe.2022.772891. eCollection 2022.
4
Polypolish: Short-read polishing of long-read bacterial genome assemblies.多聚波兰:长读细菌基因组组装的短读抛光。
PLoS Comput Biol. 2022 Jan 24;18(1):e1009802. doi: 10.1371/journal.pcbi.1009802. eCollection 2022 Jan.
5
eggNOG-mapper v2: Functional Annotation, Orthology Assignments, and Domain Prediction at the Metagenomic Scale.eggNOG-mapper v2:宏基因组尺度的功能注释、直系同源物分配和结构域预测。
Mol Biol Evol. 2021 Dec 9;38(12):5825-5829. doi: 10.1093/molbev/msab293.
6
Trycycler: consensus long-read assemblies for bacterial genomes.Trycycler:用于细菌基因组的共识长读长组装。
Genome Biol. 2021 Sep 14;22(1):266. doi: 10.1186/s13059-021-02483-z.
7
The genome polishing tool POLCA makes fast and accurate corrections in genome assemblies.基因组精修工具 POLCA 可快速准确地对基因组组装进行修正。
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8
Assembly of long, error-prone reads using repeat graphs.使用重复图组装长的、易错的读取。
Nat Biotechnol. 2019 May;37(5):540-546. doi: 10.1038/s41587-019-0072-8. Epub 2019 Apr 1.
9
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Int J Syst Evol Microbiol. 2016 Feb;66(2):1100-1103. doi: 10.1099/ijsem.0.000760. Epub 2015 Nov 9.