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靶向蛋白质无序状态:药物研发的下一个障碍。

Targeting protein disorder: the next hurdle in drug discovery.

作者信息

Lazar Tamas, Connor Acadia, DeLisle Charles F, Burger Virginia, Tompa Peter

机构信息

VIB-VUB Center for Structural Biology, Vlaams Instituut voor Biotechnologie (VIB), Brussels, Belgium.

Structural Biology Brussels, Vrije Universiteit Brussel (VUB), Brussels, Belgium.

出版信息

Nat Rev Drug Discov. 2025 Jun 9. doi: 10.1038/s41573-025-01220-6.

DOI:10.1038/s41573-025-01220-6
PMID:40490488
Abstract

Intrinsically disordered proteins have key signalling and regulatory roles in cells and are frequently dysregulated in diseases such as cancer, neurodegeneration, inflammation and autoimmune disorders. Preventing the pathological functions mediated by structural disorder is crucial to successfully target proteins that drive transcription, biomolecular condensation and protein aggregation. However, owing to their heterogeneous, highly dynamic structural states, with ensembles of rapidly interconverting conformations, disordered proteins have been considered largely 'undruggable' by traditional approaches. Here, we review key developments of the field and suggest that the synergy of advanced experimental and computational approaches needs to be pursued to conquer this barrier in drug discovery.

摘要

内在无序蛋白质在细胞中具有关键的信号传导和调节作用,并且在诸如癌症、神经退行性疾病、炎症和自身免疫性疾病等病症中经常失调。阻止由结构无序介导的病理功能对于成功靶向驱动转录、生物分子凝聚和蛋白质聚集的蛋白质至关重要。然而,由于其异质的、高度动态的结构状态,以及快速相互转化的构象集合,传统方法在很大程度上认为无序蛋白质是“不可成药的”。在这里,我们回顾了该领域的关键进展,并提出需要采用先进的实验和计算方法的协同作用来克服药物发现中的这一障碍。

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1
Targeting protein disorder: the next hurdle in drug discovery.靶向蛋白质无序状态:药物研发的下一个障碍。
Nat Rev Drug Discov. 2025 Jun 9. doi: 10.1038/s41573-025-01220-6.
2
Targeting intrinsically disordered proteins in rational drug discovery.合理药物研发中针对内在无序蛋白的研究
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本文引用的文献

1
The need to implement FAIR principles in biomolecular simulations.在生物分子模拟中实施FAIR原则的必要性。
Nat Methods. 2025 Apr;22(4):641-645. doi: 10.1038/s41592-025-02635-0.
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Accurate structure prediction of biomolecular interactions with AlphaFold 3.利用 AlphaFold 3 进行生物分子相互作用的精确结构预测。
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Conformational ensembles of the human intrinsically disordered proteome.人类内在无序蛋白质组的构象集合
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Picosecond Dynamics of a Small Molecule in Its Bound State with an Intrinsically Disordered Protein.小分子与固有无序蛋白质结合态的皮秒动力学。
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Local Disordered Region Sampling (LDRS) for ensemble modeling of proteins with experimentally undetermined or low confidence prediction segments.针对具有实验不确定或低置信度预测片段的蛋白质进行集成建模的局部无序区域采样(LDRS)。
Bioinformatics. 2023 Dec 1;39(12). doi: 10.1093/bioinformatics/btad739.
6
Rational optimization of a transcription factor activation domain inhibitor.转录因子激活结构域抑制剂的合理优化。
Nat Struct Mol Biol. 2023 Dec;30(12):1958-1969. doi: 10.1038/s41594-023-01159-5. Epub 2023 Dec 4.
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The FDA-approved anti-amyloid-β monoclonal antibodies for the treatment of Alzheimer's disease: a systematic review and meta-analysis of randomized controlled trials.经 FDA 批准用于治疗阿尔茨海默病的抗淀粉样蛋白-β单克隆抗体:一项随机对照试验的系统评价和荟萃分析。
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PED in 2024: improving the community deposition of structural ensembles for intrinsically disordered proteins.2024 年的进展:改善结构集合在无规卷曲蛋白中的社区沉积。
Nucleic Acids Res. 2024 Jan 5;52(D1):D536-D544. doi: 10.1093/nar/gkad947.
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DichroIDP: a method for analyses of intrinsically disordered proteins using circular dichroism spectroscopy.DichroIDP:一种使用圆二色性光谱分析无规卷曲蛋白的方法。
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Minimum information guidelines for experiments structurally characterizing intrinsically disordered protein regions.用于结构表征无序蛋白质区域的实验的最低信息指南。
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