来自南大洋海冰和海水的高质量宏基因组组装基因组。
High-quality metagenomic-assembled genomes from sea ice and seawater of the Southern Ocean.
作者信息
Buthelezi Z M, Pierneef R E, Bezuidt O K I, Makhalanyane T P
机构信息
Department of Biochemistry, Genetics and Microbiology, DSI/NRF South African Research Chair in Marine Microbiomics, University of Pretoria, Pretoria, South Africa.
The School for Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa.
出版信息
Microbiol Resour Announc. 2025 Jul 10;14(7):e0129824. doi: 10.1128/mra.01298-24. Epub 2025 Jun 10.
Abstract
We provide high-quality metagenome-assembled genomes (MAGs) derived from seawater and sea ice samples collected in the Southern Ocean. Several MAGs encode genes associated with dimethylsulfoniopropionate (DMSP) lyase activity and methane oxidation. This resource provides insights regarding the role of microbial communities in the production of key volatile compounds.
摘要
我们提供了源自南大洋采集的海水和海冰样本的高质量宏基因组组装基因组（MAG）。多个MAG编码与二甲基巯基丙酸内盐（DMSP）裂解酶活性和甲烷氧化相关的基因。该资源为微生物群落在关键挥发性化合物产生中的作用提供了见解。
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本文引用的文献
1
CheckM2: a rapid, scalable and accurate tool for assessing microbial genome quality using machine learning.
Nat Methods. 2023 Aug;20(8):1203-1212. doi: 10.1038/s41592-023-01940-w. Epub 2023 Jul 27.
2
eggNOG-mapper v2: Functional Annotation, Orthology Assignments, and Domain Prediction at the Metagenomic Scale.
Mol Biol Evol. 2021 Dec 9;38(12):5825-5829. doi: 10.1093/molbev/msab293.
3
Sensitive protein alignments at tree-of-life scale using DIAMOND.
Nat Methods. 2021 Apr;18(4):366-368. doi: 10.1038/s41592-021-01101-x. Epub 2021 Apr 7.
4
MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies.
PeerJ. 2019 Jul 26;7:e7359. doi: 10.7717/peerj.7359. eCollection 2019.
5
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.
Nat Biotechnol. 2017 Aug 8;35(8):725-731. doi: 10.1038/nbt.3893.
6
FQC Dashboard: integrates FastQC results into a web-based, interactive, and extensible FASTQ quality control tool.
Bioinformatics. 2017 Oct 1;33(19):3137-3139. doi: 10.1093/bioinformatics/btx373. Epub 2017 Jun 9.
7
Microorganisms and ocean global change.
Nat Microbiol. 2017 May 25;2:17058. doi: 10.1038/nmicrobiol.2017.58.
8
metaSPAdes: a new versatile metagenomic assembler.
Genome Res. 2017 May;27(5):824-834. doi: 10.1101/gr.213959.116. Epub 2017 Mar 15.
9
Optimization of DNA extraction for advancing coral microbiota investigations.
Microbiome. 2017 Feb 8;5(1):18. doi: 10.1186/s40168-017-0229-y.
10
NCBI prokaryotic genome annotation pipeline.
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
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