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识别石表生物膜的关键分类群和代谢对于保护石材遗产免受生物劣化至关重要。

Identifying keystone taxa and metabolisms of epilithic biofilms is crucial to the conservation of stone heritage from biodeterioration.

作者信息

Ma Chenchen, Zhang Xiaoying, Wu Fasi, Liu Xiaobo

机构信息

School of Environmental and Biological Engineering, Nanjing University of Science and Technology, Nanjing, China.

Department of Conservation Research, National Research Center for Conservation of Ancient Wall Paintings and Earthen Sites, Dunhuang Academy, Dunhuang, China.

出版信息

Front Microbiol. 2025 May 27;16:1600865. doi: 10.3389/fmicb.2025.1600865. eCollection 2025.

DOI:10.3389/fmicb.2025.1600865
PMID:40497045
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12150296/
Abstract

BACKGROUND

Outdoor stone heritage accounts for a large portion of UNESCO World Heritage Sites and is an essential carrier of the ancient civilization of our society. Unfortunately, they usually suffer from serious biodeterioration by diverse microbial colonizers, especially when the environment is available. As microbial communities evolve with the environment, it is important to link the bio-deteriogens to biodeterioration processes accurately.

METHODS

We used an integrative high-throughput sequencing and comparative metabolomic approach to unravel the biodeterioration of the Leizhou Stone Dog monuments.

RESULTS

The divergence and similarity of the composition of microbial biofilms colonizing the monuments indicated that photoautotrophic bacteria (e.g., , , and ) and nitrifying archaea (e.g., the family ) and/or bacteria (e.g., and ) are the keystone taxa governing the biodeterioration processes. Further, the correlation between the keystone taxa and physicochemical properties confirmed the consistency of the observations of the keystone metabolisms involved in the biodeterioration processes.

CONCLUSION

Our study highlights the necessity of a case-by-case diagnosis of the keystone taxa and metabolisms before any therapy, advancing the conservation science of cultural heritage.

摘要

背景

户外石质遗产在联合国教科文组织世界遗产中占很大比例,是我们社会古代文明的重要载体。不幸的是,它们通常会受到各种微生物殖民者的严重生物劣化影响,尤其是在环境适宜时。由于微生物群落随环境而演变,准确地将生物劣化剂与生物劣化过程联系起来很重要。

方法

我们采用综合高通量测序和比较代谢组学方法来揭示雷州石狗雕像的生物劣化情况。

结果

在雕像上定殖的微生物生物膜组成的差异和相似性表明,光合自养细菌(如 、 和 )、硝化古菌(如 科)和/或细菌(如 和 )是控制生物劣化过程的关键类群。此外,关键类群与理化性质之间的相关性证实了生物劣化过程中关键代谢观察结果的一致性。

结论

我们的研究强调了在进行任何修复之前对关键类群和代谢进行个案诊断的必要性,推动了文化遗产保护科学的发展。

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本文引用的文献

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Environmental Proteomics Elucidates Phototrophic Biofilm Responses to Ornamental Lighting on Stone-built Heritage.环境蛋白质组学阐明了对石质遗产装饰性照明的光养生物膜响应。
Microb Ecol. 2024 Nov 22;87(1):147. doi: 10.1007/s00248-024-02465-1.
2
Identifying the major metabolic potentials of microbial-driven carbon, nitrogen and sulfur cycling on stone cultural heritage worldwide.确定全球石质文化遗产上微生物驱动的碳、氮和硫循环的主要代谢潜力。
Sci Total Environ. 2024 Dec 1;954:176757. doi: 10.1016/j.scitotenv.2024.176757. Epub 2024 Oct 6.
3
Metabolic potential of Nitrososphaera-associated clades.
与硝化螺旋菌相关的类群的代谢潜能。
ISME J. 2024 Jan 8;18(1). doi: 10.1093/ismejo/wrae086.
4
Effects of the epiphytic patterns on endophytes and metabolites of Lindl.附生模式对石斛兰内生菌和代谢产物的影响
Front Plant Sci. 2024 Mar 14;15:1326998. doi: 10.3389/fpls.2024.1326998. eCollection 2024.
5
Dominance by cyanobacteria in the newly formed biofilms on stone monuments under a protective shade at the Beishiku Temple in China.在中国碧山寺受保护遮荫下的石碑新形成生物膜中蓝细菌的优势。
Environ Res. 2024 Jun 15;251(Pt 1):118576. doi: 10.1016/j.envres.2024.118576. Epub 2024 Mar 1.
6
Community structures and biodeterioration processes of epilithic biofilms imply the significance of micro-environments.附石生物膜的群落结构和生物劣化过程暗示了微环境的重要性。
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In Living Color: Pigment-Based Microbial Ecology At the Mineral-Air Interface.色彩斑斓:矿物-空气界面基于色素的微生物生态学
Bioscience. 2022 Oct 22;72(12):1156-1175. doi: 10.1093/biosci/biac091. eCollection 2022 Dec.
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Trends Microbiol. 2022 Sep;30(9):816-819. doi: 10.1016/j.tim.2022.05.012. Epub 2022 Jun 22.
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Curr Opin Biotechnol. 2022 Jun;75:102716. doi: 10.1016/j.copbio.2022.102716. Epub 2022 Apr 11.