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合成货物衔接蛋白揭示了可增强动力蛋白激活的分子特征。

Synthetic cargo adaptors reveal molecular features that can enhance dynein activation.

作者信息

Siva Aravintha, Gillies John P, de Borchgrave Ashley, Garrott Sharon R, Mishra Rishi, Jbeily Rita El, Clarke Reagan S, Conklin Cameron, Gibson Daytan, Zang Juliana L, DeSantis Morgan E

机构信息

University of Michigan, Department of Molecular Cellular and Developmental Biology, Ann Arbor, MI 48109.

University of Michigan School of Medicine, Biological Chemistry Department, Ann Arbor, MI 48109.

出版信息

bioRxiv. 2025 Jun 7:2025.06.06.658359. doi: 10.1101/2025.06.06.658359.

Abstract

Cytoplasmic dynein-1 (dynein) is the primary retrograde-directed microtubule motor in most eukaryotes. To be active, dynein must bind to the dynactin complex and a cargo-specific adaptor to form the . There are nearly 20 adaptors that, despite having low sequence identity, all contain two discrete domains that mediate binding to the same regions of dynein and dynactin. Additionally, all adaptors seem to generate active transport complexes with grossly similar structures. Despite these similarities, active transport complexes formed with different adaptors show differences in their velocity, run length, and microtubule binding affinity. The molecular features in adaptors that underlie the differences in activity is unknown. To address this question, we first generated a library of synthetic adaptors by deleting or systematically swapping characterized dynein and dynactin binding domains for four endogenous, model adaptors, NINL, BicD2, KASH5, and Hook3. We then used binding assays and TIRF-based motility assays to assess each synthetic adaptors' ability to bind and activate dynein and dynactin. First, we found that the adaptors' coiled-coil domains, which bind dynactin and the tail domain of dynein, are necessary and sufficient for dynein activation. Second, we found that all endogenous adaptors could be modified to yield a synthetic adaptor that formed more motile active transport complexes, which suggests that there is no selective pressure for adaptors to maximize dynein motility. Indeed, our data suggest that some endogenous adaptor sequences may have evolved to generate active transport complexes that are only moderately motile. Finally, we found that one synthetic adaptor was hyperactive and generated active transport complexes that moved faster, farther, and more frequently than all other endogenous and synthetic adaptors. By performing structure-function analyses with the hyperactive adaptor, we discovered that increased random coil at key positions in an adaptor sequence increases the likelihood that dynein-dynactin-adaptor complexes that assemble will be motile. Our work supports a model where increased adaptor flexibility facilitates a type of kinetic proofreading that specifically destabilizes improperly assembled and inactive dynein-dynactin-adaptor complexes. These results provide insight into how differences in adaptor sequences could contribute to differential dynein regulation.

摘要

细胞质动力蛋白-1(动力蛋白)是大多数真核生物中主要的逆向微管马达。要发挥活性,动力蛋白必须与动力蛋白激活蛋白复合体以及货物特异性衔接蛋白结合,以形成……。有近20种衔接蛋白,尽管它们的序列同一性较低,但都包含两个离散结构域,介导与动力蛋白和动力蛋白激活蛋白的相同区域结合。此外,所有衔接蛋白似乎都能形成结构大致相似的活性转运复合体。尽管存在这些相似性,但由不同衔接蛋白形成的活性转运复合体在速度、运行长度和微管结合亲和力方面存在差异。衔接蛋白中导致活性差异的分子特征尚不清楚。为了解决这个问题,我们首先通过删除或系统交换四种内源性模型衔接蛋白NINL、BicD2、KASH5和Hook3的已鉴定的动力蛋白和动力蛋白激活蛋白结合结构域,生成了一个合成衔接蛋白文库。然后,我们使用结合测定和基于全内反射荧光显微镜(TIRF)的运动测定来评估每个合成衔接蛋白结合和激活动力蛋白及动力蛋白激活蛋白的能力。首先,我们发现衔接蛋白的卷曲螺旋结构域,它结合动力蛋白激活蛋白和动力蛋白的尾部结构域,对于动力蛋白激活是必要且充分的。其次,我们发现所有内源性衔接蛋白都可以被修饰,以产生一种形成更具运动性的活性转运复合体的合成衔接蛋白,这表明不存在使衔接蛋白最大化动力蛋白运动性的选择压力。事实上,我们的数据表明,一些内源性衔接蛋白序列可能已经进化为产生运动性仅为中等的活性转运复合体。最后,我们发现一种合成衔接蛋白活性过高,产生的活性转运复合体比所有其他内源性和合成衔接蛋白移动得更快更远且更频繁。通过对这种活性过高的衔接蛋白进行结构-功能分析,我们发现衔接蛋白序列中关键位置随机卷曲的增加会增加组装的动力蛋白-动力蛋白激活蛋白-衔接蛋白复合体具有运动性的可能性。我们的工作支持了一个模型,即衔接蛋白灵活性的增加促进了一种动力学校对,这种校对会特异性地破坏组装不当和无活性的动力蛋白-动力蛋白激活蛋白-衔接蛋白复合体的稳定性。这些结果为衔接蛋白序列差异如何导致动力蛋白调控差异提供了见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8845/12157435/83bdb35cb27a/nihpp-2025.06.06.658359v1-f0001.jpg

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