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全国范围内对源自垃圾填埋场的有机卤呼吸细菌的筛选揭示了微生物还原脱卤过程中一种独特的交叉喂养相互作用。

Nationwide screening of landfill-derived organohalide-respiring bacteria elucidates a unique cross-feeding interaction for microbial reductive dehalogenation.

作者信息

Shen Rui, Li Qihao, Lu Qihong, He Zhili, He Xiaosong, Wang Shanquan

机构信息

School of Environmental Science and Engineering, Environmental Microbiomics Research Center, Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Sun Yat-Sen University, Guangzhou 510006, PR China.

Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Zhuhai 519080, PR China.

出版信息

Water Res. 2025 Sep 15;284:123964. doi: 10.1016/j.watres.2025.123964. Epub 2025 Jun 6.

DOI:10.1016/j.watres.2025.123964
PMID:40505375
Abstract

Landfill as a major reservoir of organohalide pollutants provides a unique niche for selective enrichment of organohalide-respiring bacteria (OHRB), playing a critical role in cycling of anthropogenic organohalides in natural environments. Nonetheless, information on the landfill-derived OHRB and associated microbial interactions for microbial reductive dehalogenation remains unknown. In this study, dehalogenation microcosms were established with nationwide landfill leachate samples collected from 45 cities in China, which dechlorinated a common anthropogenic organohalide - tetrachloroethene - to chloroethenes in varied extent. Both the 16S rRNA gene amplicon-sequencing and metagenomics analyses suggested critical roles of unknown Dehalococcoidia and phylogenetically-diverse facultative OHRB in microbial reductive dehalogenation in landfills. Further culture-based interaction examination showed a complicated metabolic network among OHRB, sulfate-reducing bacteria, fermenting bacteria and methanogenic archaea. Particularly, the acetate competition between obligate/facultative OHRB and methanogens were shown to have a threshold concentration of 0.06/0.20 mM, above which the methanogenic Methanosarcina became more competitive, in contrast to the dominance of acetotrophy of obligate/facultative OHRB under the threshold concentration. Accordingly, the Methanosarcina and OHRB preferred acetate transfer from fermenting Clostridium and sulfate-reducing Desulfovibrio, respectively, which was determined by the "Maximum Power Principle" to maximize ecological fitness through optimizing energy utilization efficiency. This study provided the first insight into landfill-derived OHRB and their metabolic interactions with associated functional microorganisms, which could support future bioremediation of organohalide-contaminated landfills.

摘要

垃圾填埋场作为有机卤化物污染物的主要储存库,为有机卤化物呼吸细菌(OHRB)的选择性富集提供了独特的生态位,在自然环境中人为有机卤化物的循环中起着关键作用。然而,关于源自垃圾填埋场的OHRB以及微生物还原脱卤相关的微生物相互作用的信息仍然未知。在本研究中,利用从中国45个城市收集的全国性垃圾渗滤液样本建立了脱卤微观世界,这些样本将常见的人为有机卤化物——四氯乙烯——不同程度地脱氯为氯乙烯。16S rRNA基因扩增子测序和宏基因组分析均表明,未知的脱卤球菌纲和系统发育多样的兼性OHRB在垃圾填埋场微生物还原脱卤中起关键作用。进一步基于培养的相互作用检测显示,OHRB、硫酸盐还原细菌、发酵细菌和产甲烷古菌之间存在复杂的代谢网络。特别是,专性/兼性OHRB与产甲烷菌之间的乙酸盐竞争显示出阈值浓度分别为0.06/0.20 mM,高于该浓度时,产甲烷的甲烷八叠球菌变得更具竞争力,而在阈值浓度以下,专性/兼性OHRB以乙酸营养为主导。因此,甲烷八叠球菌和OHRB分别优先从发酵的梭菌属和硫酸盐还原的脱硫弧菌属转移乙酸盐,这是由“最大功率原理”决定的,通过优化能量利用效率来最大化生态适应性。本研究首次深入了解了源自垃圾填埋场的OHRB及其与相关功能微生物的代谢相互作用,可为未来有机卤化物污染垃圾填埋场的生物修复提供支持。

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