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使用基质辅助激光解吸电离飞行时间质谱(MALDI-TOF MS)和机器学习快速鉴定和分型耐碳青霉烯类肺炎克雷伯菌

Rapid Identification and Typing of Carbapenem-Resistant Klebsiella pneumoniae Using MALDI-TOF MS and Machine Learning.

作者信息

Ye Zhiyi, Zhu Jin, Liu Yang, Lu Jun

机构信息

Department of Clinical Laboratory, Quzhou People's Hospital, the Quzhou Affiliated Hospital of Wenzhou Medical University, Quzhou, China.

出版信息

Microb Biotechnol. 2025 Jun;18(6):e70184. doi: 10.1111/1751-7915.70184.

DOI:10.1111/1751-7915.70184
PMID:40522100
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12168492/
Abstract

Use matrix-assisted laser desorption ionisation time-of-flight mass spectrometry (MALDI-TOF MS) to screen the specific mass peaks of carbapenem-resistant Klebsiella pneumoniae (CRKP), compare the differences in spectrum peaks between intestinal and bloodstream screening of CRKP, and assess the utility of MALDI-TOF MS in quickly identifying various CRKP sources. From 2014 to 2023, a total of 267 Klebsiella pneumoniae strains were collected at Quzhou People's Hospital, including 60 intestinal screening isolates from ICU patients and 207 bloodstream infection isolates. MALDI-TOF MS was used to profile peptides in CRKP and carbapenem-sensitive Klebsiella pneumoniae (CSKP), followed by analysis with flexAnalysis and ClinProTools 3.0. Statistically significant protein peaks were selected to build classification models, which were verified using non-duplicate strains. MALDI-TOF MS achieved > 99.9% accuracy in identifying Klebsiella pneumoniae. Characteristic peaks (2523.43, 3041.62, 4520.11, 10,079.18 Da) were used to develop resistance analysis models, with the optimal model (SNN) showing 90.08% sensitivity, 95.80% specificity and identification accuracies of 90% for CSKP and 89.66% for CRKP. Another model using peaks (8876, 8993, 9139 Da) differentiated CRKP origins, with the ideal model (QC) achieving 86.85% sensitivity, 88.46% specificity, and accuracies of 81.82% for bloodstream and 95.00% for intestinal CRKP.

摘要

使用基质辅助激光解吸电离飞行时间质谱(MALDI-TOF MS)筛选耐碳青霉烯类肺炎克雷伯菌(CRKP)的特异性质量峰,比较CRKP肠道筛查和血流筛查的谱峰差异,并评估MALDI-TOF MS在快速鉴定各种CRKP来源方面的效用。2014年至2023年,衢州市人民医院共收集了267株肺炎克雷伯菌,其中包括60株来自ICU患者的肠道筛查分离株和207株血流感染分离株。使用MALDI-TOF MS对CRKP和碳青霉烯类敏感肺炎克雷伯菌(CSKP)中的肽进行分析,随后用flexAnalysis和ClinProTools 3.0进行分析。选择具有统计学意义的蛋白质峰建立分类模型,并用非重复菌株进行验证。MALDI-TOF MS在鉴定肺炎克雷伯菌方面的准确率>99.9%。使用特征峰(2523.43、3041.62、4520.11、10079.18 Da)建立耐药性分析模型,最佳模型(SNN)的灵敏度为90.08%,特异性为95.80%,CSKP的鉴定准确率为90%,CRKP的鉴定准确率为89.66%。另一个使用峰(8876、8993、9139 Da)区分CRKP来源的模型,理想模型(QC)的灵敏度为86.85%,特异性为88.46%,血流CRKP的准确率为81.82%,肠道CRKP的准确率为95.00%。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/08de/12168492/fe46c986fdf3/MBT2-18-e70184-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/08de/12168492/3d3b4172186c/MBT2-18-e70184-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/08de/12168492/7492af77977d/MBT2-18-e70184-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/08de/12168492/2f4a12d7e97e/MBT2-18-e70184-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/08de/12168492/a5dbfd65cf6a/MBT2-18-e70184-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/08de/12168492/fe46c986fdf3/MBT2-18-e70184-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/08de/12168492/3d3b4172186c/MBT2-18-e70184-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/08de/12168492/7492af77977d/MBT2-18-e70184-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/08de/12168492/2f4a12d7e97e/MBT2-18-e70184-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/08de/12168492/a5dbfd65cf6a/MBT2-18-e70184-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/08de/12168492/fe46c986fdf3/MBT2-18-e70184-g001.jpg

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Context-dependent virulence in Klebsiella pneumoniae: deciphering niche-specific adaptation and virulence-resistance interplay.肺炎克雷伯菌的环境依赖性毒力:解读特定生态位适应性与毒力-抗性相互作用
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