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丙酮酸:铁氧化还原蛋白氧化还原酶的氧化还原格局揭示了通常保守的铁硫簇电位。

The redox landscape of pyruvate:ferredoxin oxidoreductases reveals often conserved Fe-S cluster potentials.

作者信息

Bonitatibus Sheila C, Pham Ryan V, Weitz Andrew C, Lopéz-Muñoz Madeline M, Li Bin, Metcalf William W, Nair Satish K, Elliott Sean J

机构信息

Department of Chemistry, Boston University, Boston, Massachusetts, United States.

Department of Microbiology, University of Illinois at Urbana-Champaign, Urbana, Illinois, United States; Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, United States.

出版信息

J Biol Chem. 2025 Aug;301(8):110380. doi: 10.1016/j.jbc.2025.110380. Epub 2025 Jun 16.

DOI:10.1016/j.jbc.2025.110380
PMID:40533063
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12337175/
Abstract

Here, we investigate the thermodynamic driving force of internal electron transfer of pyruvate:ferredoxin oxidoreductases (PFORs), by comparing the redox properties of a series of PFORs from Chlorobaculum tepidum, Magnetococcus marinus, Methanosarcina acetivorans, as well as revisiting the single historical precedent, the enzyme from Desulfovibrio africanus. These enzymes require a thiamine pyrophosphate cofactor, three [4Fe-4S] clusters, and CoA for activity and are found within anaerobic organisms that utilize the reverse tricarboxylic acid cycle, or other reductive pathways, performing carbon dioxide reduction and pyruvate synthesis. Yet, PFOR is often invoked as an oxidative enzyme responsible for generating reducing equivalents in the form of the redox carrier ferredoxin. Previous efforts to understand the mechanism of PFOR have relied upon a prior report of the iron-sulfur redox potentials derived from an incomplete redox titration. Here, we use direct protein film electrochemistry to provide a side-by-comparison of four PFOR enzymes, providing a new assessment of the iron-sulfur cluster redox potentials. As the Methanosarcina acetivorans PFOR is comprised of multiple polypeptides, our investigation of the recombinant PorD subunit allows us to construct a model, where the revised redox potentials are mapped to specific iron-sulfur clusters.

摘要

在此,我们通过比较嗜热绿菌、海磁球菌、食乙酸甲烷八叠球菌的一系列丙酮酸:铁氧化还原蛋白氧化还原酶(PFORs)的氧化还原特性,以及重新审视唯一的历史先例——来自非洲脱硫弧菌的酶,来研究PFORs内部电子转移的热力学驱动力。这些酶需要硫胺焦磷酸辅因子、三个[4Fe-4S]簇和辅酶A才能发挥活性,并且存在于利用逆向三羧酸循环或其他还原途径进行二氧化碳还原和丙酮酸合成的厌氧生物体内。然而,PFOR通常被认为是一种氧化酶,负责以氧化还原载体铁氧化还原蛋白的形式产生还原当量。此前了解PFOR机制的努力依赖于一份来自不完整氧化还原滴定的铁硫氧化还原电位的先前报告。在此,我们使用直接蛋白质膜电化学对四种PFOR酶进行并排比较,对铁硫簇氧化还原电位进行新的评估。由于食乙酸甲烷八叠球菌PFOR由多个多肽组成,我们对重组PorD亚基的研究使我们能够构建一个模型,将修正后的氧化还原电位映射到特定的铁硫簇上。

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本文引用的文献

1
Assessing the role of redox carriers in the reduction of CO by the oxo-acid: ferredoxin oxidoreductase superfamily.评估氧化还原载体在氧酸酸:铁氧还蛋白氧化还原酶超家族还原 CO 中的作用。
Methods Enzymol. 2024;708:275-295. doi: 10.1016/bs.mie.2024.10.022. Epub 2024 Nov 15.
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Structural organization of pyruvate: ferredoxin oxidoreductase from the methanogenic archaeon Methanosarcina acetivorans.丙酮酸:产甲烷古菌 Methanosarcina acetivorans 中的铁氧还蛋白氧化还原酶的结构组织。
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Redox potential changes during ATP-dependent corrinoid reduction determined by redox titrations with europium(II)-DTPA.通过铕(II)-DTPA 的氧化还原滴定测定 ATP 依赖性钴胺素还原过程中的氧化还原电位变化。
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New light on ancient enzymes - in vitro CO Fixation by Pyruvate Synthase of Desulfovibrio africanus and Sulfolobus acidocaldarius.古老酶的新启示——来自非洲脱硫弧菌和嗜酸热硫化叶菌的丙酮酸合酶的体外 CO 固定。
FEBS J. 2019 Nov;286(22):4494-4508. doi: 10.1111/febs.14981. Epub 2019 Jul 19.
6
A reverse TCA cycle 2-oxoacid:ferredoxin oxidoreductase that makes C-C bonds from CO.一种逆向三羧酸循环2-氧代酸:铁氧化还原蛋白氧化还原酶,可利用一氧化碳形成碳-碳键。
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Determining Redox Potentials of the Iron-Sulfur Clusters of the AdoMet Radical Enzyme Superfamily.确定腺苷甲硫氨酸自由基酶超家族中铁硫簇的氧化还原电位。
Methods Enzymol. 2018;606:319-339. doi: 10.1016/bs.mie.2018.06.002. Epub 2018 Jul 5.
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Binding site for coenzyme A revealed in the structure of pyruvate:ferredoxin oxidoreductase from .辅酶 A 结合位点在. 丙酮酸:铁氧还蛋白氧化还原酶的结构中被揭示。
Proc Natl Acad Sci U S A. 2018 Apr 10;115(15):3846-3851. doi: 10.1073/pnas.1722329115. Epub 2018 Mar 26.
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