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从传播到适应性进化:盖塔病毒的基因组监测

From transmission to adaptive evolution: genomic surveillance of Getah virus.

作者信息

Yuan Yuge, Hao Yujia, Peng Chengcheng, Zhang Duo, Ma Wenzhou, Xiao Pengpeng, Li Nan

机构信息

Wenzhou Key Laboratory for Virology and Immunology, Institute of Virology, Wenzhou University, Wenzhou, China.

College of Veterinary Medicine, Jilin University, Changchun, China.

出版信息

Front Cell Infect Microbiol. 2025 Jun 4;15:1513392. doi: 10.3389/fcimb.2025.1513392. eCollection 2025.

DOI:10.3389/fcimb.2025.1513392
PMID:40535537
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12174390/
Abstract

Getah virus (GETV) is a member of the of the . It is a single-stranded positive-RNA virus that is mainly transmitted by mosquitoes. In recent years, the spread of GETV has become increasingly serious, causing serious losses to the animal economy and posing a potential threat to public health. GETV infected animals extend from traditional domestic animals such as horses and pigs to cattle, foxes and other animals. Especially in China, the virus has been detected in many provinces in recent years. In addition, GETV-specific antibodies were detected in healthy humans. However, the threat posed by GETV in China has not received enough attention. In this study, we downloaded all available GETV genome-wide serials (82 serials in total) from the NCBI as of December 2023. We integrate multiple bioinformatics approaches to understand the characteristics of GETV from the perspectives of epidemiology, virus-host co-evolution, and viral adaptation analysis. The results of this study show that GETV is rapidly expanding its host range and geographical distribution at high evolutionary rates due to the lack of commercially available vaccines. Second, we clearly reveal the cross-species transmission of GETV. Finally, we identified important adaptive and active selection sites. GETV and its media are widely distributed in China, and new host infections continue to appear. Therefore, strengthening surveillance and prevention to avoid serious losses to the pandemic is an important task we face today.

摘要

盖塔病毒(GETV)是[此处原文信息不完整]的成员。它是一种单链正RNA病毒,主要通过蚊子传播。近年来,GETV的传播日益严重,给动物经济造成严重损失,并对公共卫生构成潜在威胁。GETV感染的动物范围从马和猪等传统家畜扩展到牛、狐狸等其他动物。特别是在中国,近年来该病毒已在多个省份被检测到。此外,在健康人群中也检测到了GETV特异性抗体。然而,GETV在中国构成的威胁尚未得到足够重视。在本研究中,我们从NCBI下载了截至2023年12月所有可用的GETV全基因组序列(共82个序列)。我们整合多种生物信息学方法,从流行病学、病毒-宿主共同进化和病毒适应性分析等角度了解GETV的特征。本研究结果表明,由于缺乏商业化疫苗,GETV正以高进化速率迅速扩大其宿主范围和地理分布。其次,我们明确揭示了GETV的跨物种传播。最后,我们确定了重要的适应性和正选择位点。GETV及其传播媒介在中国广泛分布,新的宿主感染不断出现。因此,加强监测和预防以避免大流行造成严重损失是我们当今面临的一项重要任务。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e8cc/12174390/e3fb951961a0/fcimb-15-1513392-g007.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e8cc/12174390/e3fb951961a0/fcimb-15-1513392-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e8cc/12174390/6a5661bfeb8a/fcimb-15-1513392-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e8cc/12174390/7b33824e9f9f/fcimb-15-1513392-g002.jpg
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本文引用的文献

1
Evaluating the mosquito host range of Getah virus and the vector competence of selected medically important mosquitoes in Getah virus transmission.评估基孔肯雅病毒的蚊宿主范围和选定的医学重要蚊在基孔肯雅病毒传播中的媒介效能。
Parasit Vectors. 2023 Mar 15;16(1):99. doi: 10.1186/s13071-023-05713-4.
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Seroprevalence of in Pigs in Eastern China Determined with a Recombinant E2 Protein-Based Indirect ELISA.应用基于重组 E2 蛋白的间接 ELISA 方法检测中国东部地区猪群中 的血清流行率。
Viruses. 2022 Sep 30;14(10):2173. doi: 10.3390/v14102173.
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Getah Virus (Alphavirus): An Emerging, Spreading Zoonotic Virus.
盖塔病毒(甲病毒属):一种正在出现、传播的人畜共患病毒。
Pathogens. 2022 Aug 20;11(8):945. doi: 10.3390/pathogens11080945.
4
Attenuation of Getah Virus by a Single Amino Acid Substitution at Residue 253 of the E2 Protein that Might Be Part of a New Heparan Sulfate Binding Site on Alphaviruses.E2 蛋白 253 位单个氨基酸取代可能是甲病毒新的肝素硫酸结合位点的一部分,能使基孔肯雅病毒的感染力减弱。
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Origin, genetic diversity, adaptive evolution and transmission dynamics of Getah virus.基孔肯雅病毒的起源、遗传多样性、适应性进化和传播动力学。
Transbound Emerg Dis. 2022 Jul;69(4):e1037-e1050. doi: 10.1111/tbed.14395. Epub 2021 Dec 13.
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Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation.交互式生命树 (iTOL) v5:一个用于显示和注释系统发育树的在线工具。
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Sustain Cities Soc. 2020 Dec;63:102466. doi: 10.1016/j.scs.2020.102466. Epub 2020 Aug 28.
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Emergence and adaptive evolution of Nipah virus.尼帕病毒的出现和适应性进化。
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Emergence of Getah Virus Infection in Horse With Fever in China, 2018.2018年中国一匹发热马匹中盖塔病毒感染的出现。
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