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诱饵DNA可保护分子张力探针免受DNase降解。

Decoy DNA Protects Molecular Tension Probes from DNase Degradation.

作者信息

Zhang Hongyuan, Kim Seong Ho, Li Isaac T S

机构信息

Department of Chemistry, The University of British Columbia, Kelowna, BC, V1V1V7, Canada.

Department of Chemistry and Advanced Materials, College of Natural Sciences, Gangneung-Wonju National University, Gangneung, 25457, Republic of Korea.

出版信息

Angew Chem Int Ed Engl. 2025 Aug 18;64(34):e202506590. doi: 10.1002/anie.202506590. Epub 2025 Jun 26.

Abstract

DNA-based molecular probes are essential tools for visualizing and quantifying mechanotransduction at the single-molecule level. However, their application in live-cell environments is severely limited by DNase-mediated degradation, which shortens probe lifespan and introduces false-positive signals. Here, we present a decoy DNA strategy where an excess of unmodified double-stranded DNA competitively binds DNases, effectively preserving functional DNA probes. This approach extends probe stability from 1-2 h to beyond 24 h, substantially improving signal integrity in live-cell tension imaging. In contrast to structurally modified nucleic acids, decoy DNA can be readily applied to existing DNA probe systems, enabling seamless integration without the need for additional validation or calibration. This cost-effective and scalable strategy provides a generalizable framework for stabilizing DNA-based molecular tools in DNase-rich environments, enabling high-precision mechanobiology studies across diverse cell types and extended experiment durations.

摘要

基于DNA的分子探针是在单分子水平上可视化和量化机械转导的重要工具。然而,它们在活细胞环境中的应用受到DNase介导的降解的严重限制,这种降解会缩短探针寿命并引入假阳性信号。在这里,我们提出了一种诱饵DNA策略,即过量的未修饰双链DNA竞争性结合DNases,有效保护功能性DNA探针。这种方法将探针稳定性从1-2小时延长到超过24小时,显著提高了活细胞张力成像中的信号完整性。与结构修饰的核酸不同,诱饵DNA可以很容易地应用于现有的DNA探针系统,无需额外的验证或校准即可实现无缝整合。这种具有成本效益且可扩展的策略为在富含DNase的环境中稳定基于DNA的分子工具提供了一个通用框架,能够在不同细胞类型和延长的实验持续时间内进行高精度的机械生物学研究。

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