Siegel Fabian, Torelli Angelo, Mattis Minca, Debatin Julian, Erben Philipp, Gumbel Markus
Department of Biomedical Informatics, Medical Faculty Mannheim at the University of Heidelberg, Mannheim, Germany.
Competence Center for Algorithmic and Mathematical Methods in Biology, Biotechnology and Medicine, Mannheim University of Applied Sciences, Mannheim, Germany.
PLoS One. 2025 Jun 20;20(6):e0325132. doi: 10.1371/journal.pone.0325132. eCollection 2025.
The urothelium as a stratified epithelium of the urinary tract is a slow regenerating tissue of different layers and shares similarities with the epidermis. Characteristics of its cell types, regeneration, tissue homeostasis, integrity and self organization are only partly understood. Precise computer-based models which investigate the cell kinetics of the urothelium from a theoretical perspective are beneficial for the regenerative medicine field and cancer research. Here an agent-based computer simulation based on the Glazier-Graner-Hogeweg (GGH) approach were developed and tested on 16 hypotheses of proliferation and differentiation mechanisms of the healthy urothelial tissue in steady state and tissue regeneration. A fitness-function was introduced for the quantitative comparison of respective models. The findings indicate that two similar hypotheses with the following features describe the healthy tissue best: 1) Progenitor cells either divide and differentiate in a stem cell fashion or proliferate according to the population asymmetry model in epidermis, 2) Basal cells divide symmetrically and differentiate into intermediate cells depending on contact to the basal membrane. 3) Intermediate cells do not proliferate but differentiate into umbrella cells when they are in contact with the medium.
作为泌尿系统的复层上皮,尿路上皮是一种不同层的缓慢再生组织,与表皮有相似之处。其细胞类型、再生、组织稳态、完整性和自我组织的特征仅得到部分理解。从理论角度研究尿路上皮细胞动力学的精确计算机模型对再生医学领域和癌症研究有益。在此,基于Glazier-Graner-Hogeweg(GGH)方法开发了一种基于智能体的计算机模拟,并在稳态和组织再生过程中健康尿路上皮组织增殖和分化机制的16个假设上进行了测试。引入了一个适应度函数用于各模型的定量比较。研究结果表明,具有以下特征的两个相似假设最能描述健康组织:1)祖细胞要么以干细胞方式分裂和分化,要么根据表皮中的群体不对称模型增殖;2)基底细胞对称分裂并根据与基底膜的接触分化为中间细胞;3)中间细胞不增殖,但当它们与介质接触时分化为伞细胞。