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白藜芦醇作用模式的深入分析:G-四链体结合特性的全基因组表征

In-depth analysis of the mode of action of resveratrol: genome-wide characterization of G-quadruplex binding properties.

作者信息

Soriano-Lerma Ana, Sánchez-Martín Victoria, Murciano-Calles Javier, Ortiz-González Matilde, Tello-López María J, Pérez-Carrasco Virginia, Linde-Rodríguez Ángel, Ramírez-Macías Inmaculada, Gómez-Pìnto Irene, López-Aliaga Inmaculada, Soriano Miguel, Garcia Salcedo Jose A

机构信息

GENYO, Centre for Genomics and Oncological Research: Pfizer/University of Granada/Andalusian Regional Government, 18016, Granada, Spain.

Department of Physiology (Faculty of Pharmacy), Institute of Nutrition and Food Technology "José Mataix", University of Granada, 18071, Granada, Spain.

出版信息

Cell Mol Biol Lett. 2025 Jun 20;30(1):74. doi: 10.1186/s11658-025-00747-1.


DOI:10.1186/s11658-025-00747-1
PMID:40542407
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12180162/
Abstract

BACKGROUND: Resveratrol (RSV) is one of the most studied and used biomolecules, for which many pharmacological effects targeting multiple tissues have been described. However, a common underlying mechanism driving its full pharmacological activity has not been described in detail. G-quadruplexes (G4s) are non-canonical nucleic acid structures found in regulatory genomic locations and involved in controlling gene transcription, telomere maintenance, or genome stability, among others. This study provides a genome-wide characterization of RSV G4-binding properties, explaining its multi-target traits. METHODS: Immunofluorescence assays using a nucleolar and a G4-specific antibody were used to characterize RSV cellular effects on the nucleolus and G4 stabilization. DNA damage and cell cycle analyses were performed via western blot and flow cytometry. Breaks lLbeling In Situ and Sequencing (BLISS) was used to map double strand breaks (DSB) in response to treatment, and identify G4s targeted by RSV. mRNA sequencing was used to identify changes at the transcriptional level upon treatment and relate them to a direct targeting of G4s. Biophysical assays (circular dichroism, ultraviolet-visible [UV-Vis] titration, differential scanning calorimetry, and nuclear magnetic resonance) were used to characterize RSV-G4 interactions. Lastly, luciferase-based transcription assays were performed to confirm RSV-G4 interaction in vitro and its direct influence on gene expression. RESULTS: In a cellular context, RSV treatment showed classic G4-ligand effects, such as nucleolar disassembly, inhibition of RNA polymerase I, DNA damage, and cell cycle arrest. RSV was shown to stabilize cellular G4s, which accumulated around double strand breaks in the promoters of differentially expressed genes. Upon treatment, G4 stabilization triggered DNA damage and controlled gene expression. The interaction between RSV and target G4s was confirmed in vitro by biophysical assays and through luciferase-based transcription assays. CONCLUSIONS: A G4-dependent mode of action was demonstrated as the main mechanism underlying RSV pleiotropic effects, along with the identification of target genes and G4s. This in-depth analysis of the mode of action of RSV will be helpful to improve its therapeutic potential in a wide variety of health scenarios.

摘要

背景:白藜芦醇(RSV)是研究和应用最多的生物分子之一,已报道其对多种组织具有多种药理作用。然而,尚未详细描述驱动其完整药理活性的共同潜在机制。G-四链体(G4s)是在调控基因组位置发现的非经典核酸结构,参与控制基因转录、端粒维持或基因组稳定性等。本研究对白藜芦醇与G4的结合特性进行了全基因组表征,解释了其多靶点特性。 方法:使用核仁特异性抗体和G4特异性抗体进行免疫荧光分析,以表征白藜芦醇对核仁的细胞效应和G4稳定作用。通过蛋白质免疫印迹和流式细胞术进行DNA损伤和细胞周期分析。使用原位断裂标记和测序(BLISS)来绘制双链断裂(DSB)图谱以响应处理,并鉴定白藜芦醇靶向的G4。mRNA测序用于鉴定处理后转录水平的变化,并将其与G4的直接靶向联系起来。使用生物物理分析(圆二色性、紫外可见[UV-Vis]滴定、差示扫描量热法和核磁共振)来表征白藜芦醇与G4的相互作用。最后,进行基于荧光素酶的转录分析以确认白藜芦醇与G4在体外的相互作用及其对基因表达的直接影响。 结果:在细胞环境中,白藜芦醇处理显示出经典的G4配体效应,如核仁解体、RNA聚合酶I抑制、DNA损伤和细胞周期停滞。白藜芦醇被证明可稳定细胞中的G4,这些G4在差异表达基因启动子的双链断裂周围积累。处理后,G4稳定引发DNA损伤并控制基因表达。通过生物物理分析和基于荧光素酶的转录分析在体外证实了白藜芦醇与靶标G4之间的相互作用。 结论:证明了一种G4依赖性作用模式是白藜芦醇多效性作用的主要机制,同时鉴定了靶基因和G4。对白藜芦醇作用模式的深入分析将有助于提高其在多种健康场景中的治疗潜力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/98d1/12180162/9d998907040a/11658_2025_747_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/98d1/12180162/554089ce06b4/11658_2025_747_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/98d1/12180162/09b4db8f155d/11658_2025_747_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/98d1/12180162/6d5d69cbf1c8/11658_2025_747_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/98d1/12180162/9d998907040a/11658_2025_747_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/98d1/12180162/554089ce06b4/11658_2025_747_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/98d1/12180162/09b4db8f155d/11658_2025_747_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/98d1/12180162/6d5d69cbf1c8/11658_2025_747_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/98d1/12180162/9d998907040a/11658_2025_747_Fig4_HTML.jpg

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本文引用的文献

[1]
Resveratrol for the Management of Human Health: How Far Have We Come? A Systematic Review of Resveratrol Clinical Trials to Highlight Gaps and Opportunities.

Int J Mol Sci. 2024-1-6

[2]
Phosphoinositide Signaling in Immune Cell Migration.

Biomolecules. 2023-11-24

[3]
Individual phosphatidylinositol transfer proteins have distinct functions that do not involve lipid transfer activity.

Blood Adv. 2023-8-22

[4]
Resveratrol induces DNA damage-mediated cancer cell senescence through the DLC1-DYRK1A-EGFR axis.

Food Funct. 2023-2-6

[5]
Gallic Acid: A Natural Phenolic Compound Exerting Antitumoral Activities in Colorectal Cancer via Interaction with G-Quadruplexes.

Cancers (Basel). 2022-5-26

[6]
Alternative splicing modulation by G-quadruplexes.

Nat Commun. 2022-5-3

[7]
Resveratrol Inhibits NLRP3 Inflammasome-Induced Pyroptosis and miR-155 Expression in Microglia Through Sirt1/AMPK Pathway.

Neurotox Res. 2021-12

[8]
DNA G-quadruplex structures: more than simple roadblocks to transcription?

Nucleic Acids Res. 2021-9-7

[9]
DNA damage repair: historical perspectives, mechanistic pathways and clinical translation for targeted cancer therapy.

Signal Transduct Target Ther. 2021-7-9

[10]
Targeting ribosomal G-quadruplexes with naphthalene-diimides as RNA polymerase I inhibitors for colorectal cancer treatment.

Cell Chem Biol. 2021-11-18

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