双编码基因SLC35A4可抵御氧化应激。

The dual-coding gene SLC35A4 protects against oxidative stress.

作者信息

Ajala Ikram, Tiaiba Imadeddine, Grondin Benoît, Lipuma Damien, Jmii Souleimen, Benlyamani Hiba, Cappadocia Laurent, Vanderperre Benoît

机构信息

Département des Sciences Biologiques, Université du Québec à Montréal, Montréal, Quebec, Canada.

Centre d'Excellence de Recherche sur les Maladies Orphelines - Fondation Courtois (CERMO-FC), Montréal, Quebec, Canada.

出版信息

Protein Sci. 2025 Jul;34(7):e70197. doi: 10.1002/pro.70197.

Abstract

Alternative proteins (AltProts) represent a newly recognized class of biologically active proteins encoded from alternative open reading frames (AltORFs) within already annotated genes. This study focuses on the SLC35A4 gene, which encodes both the reference protein SLC35A4 and the alternative protein AltSLC35A4. Using a combination of microscopy and biochemical analyses, we confirmed the presence of AltSLC35A4 in the inner mitochondrial membrane, resolving previous conflicting reports. Previous studies employing ribosome profiling have revealed that during oxidative stress induced by sodium arsenite, the reference coding sequence of SLC35A4 exhibits the largest increase in translational efficiency among all cellular mRNAs. Our results confirmed this translational upregulation, with the emergence of SLC35A4 protein isoforms during oxidative stress in an upstream ORF-dependent manner. Notably, the expression of AltSLC35A4 remained unchanged during oxidative stress. Knock out of SLC35A4 or AltSLC35A4 enhanced sensitivity to oxidative stress in a rescuable manner, indicating a direct implication for these proteins in stress resistance. In conclusion, our research provides compelling evidence for the functional significance of the dual-coding nature of SLC35A4 for resistance to oxidative stress and highlights the importance of considering AltProts in the functional study of eukaryotic genes.

摘要

替代蛋白(AltProts)是一类新发现的具有生物活性的蛋白质,由已注释基因中的替代开放阅读框(AltORFs)编码。本研究聚焦于SLC35A4基因,该基因既编码参考蛋白SLC35A4,也编码替代蛋白AltSLC35A4。通过结合显微镜和生化分析,我们证实了AltSLC35A4存在于线粒体内膜中,解决了先前相互矛盾的报道。先前采用核糖体分析的研究表明,在亚砷酸钠诱导的氧化应激期间,SLC35A4的参考编码序列在所有细胞mRNA中表现出最大的翻译效率增加。我们的结果证实了这种翻译上调,在氧化应激期间,SLC35A4蛋白异构体以上游开放阅读框依赖的方式出现。值得注意的是,在氧化应激期间,AltSLC35A4的表达保持不变。敲除SLC35A4或AltSLC35A4可增强对氧化应激的敏感性,且这种敏感性是可挽救的,这表明这些蛋白质直接参与了应激抗性。总之,我们的研究为SLC35A4的双重编码性质在抗氧化应激中的功能意义提供了有力证据,并强调了在真核基因功能研究中考虑AltProts的重要性。

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