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[具体物种名称缺失]中蜕皮相关蛋白质编码基因的基因组注释揭示了对重金属污染的转录组反应 。

Genome Annotation of Molting-Related Protein-Coding Genes in Reveals Transcriptomic Responses to Heavy Metal Contamination.

作者信息

Liu Wenbin, Zhou Anmo, Shao Ziming, Nie Jiaxin, Yan Chuncai, Gao Shaobo, Wang Yiwen

机构信息

College of Life Sciences, Tianjin Normal University, Tianjin 300387, China.

Grassland Research Institute, Chinese Academy of Agricultural Sciences, Hohhot 010010, China.

出版信息

Insects. 2025 Jun 17;16(6):636. doi: 10.3390/insects16060636.

Abstract

The exoskeleton of insects, known as the cuticle, necessitates regular renewal during molting and metamorphosis, with chitin being its primary structural component. Consequently, the molting and metamorphosis processes in insects are characterized by periodic degradation and synthesis of chitin, which are tightly regulated by juvenile hormone (JH) and 20-hydroxyecdysone (20E). , a species that plays a crucial role in freshwater ecosystems, demonstrates remarkable resilience to environmental pollutants, including metallic elements found in industrial waste. In this investigation, we systematically analyzed and summarized the metabolic pathways associated with JH, 20E, chitin, and heavy metal transport in . Based on previous genome assembly, we conducted a systematic annotation and functional analysis of genes involved in these metabolic pathways in . . This was achieved by querying conserved domains using Pfam and SMART, as well as identifying gene-specific classical consensus regions through amino acid sequence alignment using DNAMAN. Through our validation, a total of 109 genes were definitively categorized into four distinct metabolic pathways: 27 genes were involved in the JH metabolic pathway, 24 in the 20E metabolic pathway, 27 in the chitin metabolic pathway, and 31 in metal transport pathways. A total of 30 genes failed our validation and were temporarily excluded. Furthermore, through RNA sequencing (RNA-seq)-based transcriptome analysis, we observed that under copper (Cu) stress, the expression levels of the majority of genes participating in these metabolic pathways in were altered. This finding suggests that copper exposure influences the molting process in .

摘要

昆虫的外骨骼,即角质层,在蜕皮和变态过程中需要定期更新,几丁质是其主要结构成分。因此,昆虫的蜕皮和变态过程的特点是几丁质的周期性降解和合成,这一过程受到保幼激素(JH)和20-羟基蜕皮酮(20E)的严格调控。 ,一种在淡水生态系统中起关键作用的物种,对环境污染物,包括工业废物中发现的金属元素,表现出显著的抗性。在本研究中,我们系统地分析和总结了与 中JH、20E、几丁质和重金属转运相关的代谢途径。基于之前的基因组组装,我们对 中参与这些代谢途径的基因进行了系统注释和功能分析。 。这是通过使用Pfam和SMART查询保守结构域,以及使用DNAMAN通过氨基酸序列比对识别基因特异性经典共有区域来实现的。通过我们的验证,共有109个基因被明确归类为四个不同的代谢途径:27个基因参与JH代谢途径,24个参与20E代谢途径,27个参与几丁质代谢途径,31个参与金属转运途径。共有30个基因未通过我们的验证,被暂时排除。此外,通过基于RNA测序(RNA-seq)的转录组分析,我们观察到在铜(Cu)胁迫下, 中参与这些代谢途径的大多数基因的表达水平发生了改变。这一发现表明,铜暴露会影响 的蜕皮过程。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/94a2/12193260/62a76b46c502/insects-16-00636-g001.jpg

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