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长链非编码RNA编码的微肽:表达验证、翻译机制及其在细胞代谢中的作用

LncRNA-Encoded Micropeptides: Expression Validation, Translational Mechanisms, and Roles in Cellular Metabolism.

作者信息

Ho Chul Woong, Lee Ji Won, Shin Chang Hoon, Min Kyung-Won

机构信息

Department of Biology, College of Natural Sciences, Gangneung-Wonju National University, Gangneung-si 25457, Republic of Korea.

Department of Oncology Science, University of Oklahoma, Oklahoma City, OK 73104, USA.

出版信息

Int J Mol Sci. 2025 Jun 19;26(12):5913. doi: 10.3390/ijms26125913.

DOI:10.3390/ijms26125913
PMID:40565374
Abstract

The discovery of functional micropeptides encoded by long noncoding RNAs (lncRNAs) has challenged the traditional view that these transcripts lack coding potential. With the advancement of high-resolution translation profiling combined with enhanced MS-based techniques, numerous lncRNAs have been found to harbor small open reading frames (sORFs) that give rise to bioactive micropeptides. These peptides participate in diverse biological processes, particularly in cellular metabolism, by modulating enzymatic activity and metabolic pathways. However, the identification and functional characterization of these micropeptides remain technically challenging due to their small size, low abundance, and the need for rigorous downstream validation studies. This review encompasses a comprehensive overview of the biogenesis of lncRNA-derived micropeptides, methodologies for detecting and validating their expression, the molecular mechanisms governing their translation, and their emerging roles in metabolic regulation. By integrating current findings and technological advancements, we highlight the potential physiological and pathological implications of these micropeptides and outline future research directions in the field.

摘要

由长链非编码RNA(lncRNA)编码的功能性微肽的发现,挑战了传统观点,即这些转录本缺乏编码潜力。随着高分辨率翻译谱分析与基于质谱的增强技术的发展,已发现众多lncRNA含有小开放阅读框(sORF),这些小开放阅读框可产生具有生物活性的微肽。这些肽通过调节酶活性和代谢途径参与多种生物学过程,特别是细胞代谢。然而,由于这些微肽尺寸小、丰度低且需要严格的下游验证研究,其鉴定和功能表征在技术上仍然具有挑战性。本综述全面概述了lncRNA衍生微肽的生物发生、检测和验证其表达的方法、控制其翻译的分子机制及其在代谢调节中的新作用。通过整合当前的研究结果和技术进步,我们强调了这些微肽潜在的生理和病理意义,并概述了该领域未来的研究方向。

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本文引用的文献

1
Single-molecule nanopore sensing of proline / amide isomers.脯氨酸/酰胺异构体的单分子纳米孔传感
Chem Sci. 2025 Apr 25. doi: 10.1039/d5sc01156f.
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GMRSP encoded by lncRNA H19 regulates metabolic reprogramming and alleviates aortic dissection.由长链非编码RNA H19编码的GMRSP调节代谢重编程并减轻主动脉夹层。
Nat Commun. 2025 Feb 18;16(1):1719. doi: 10.1038/s41467-025-57011-5.
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Redesign of Translocon EXP2 Nanopore for Detecting Peptide Fragments.用于检测肽片段的转运体EXP2纳米孔的重新设计
Small Methods. 2025 Apr;9(4):e2401562. doi: 10.1002/smtd.202401562. Epub 2025 Feb 5.
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Discovery of prognostic lncRNAs in colorectal cancer using spatial transcriptomics.利用空间转录组学发现结直肠癌中的预后长链非编码RNA
NPJ Precis Oncol. 2024 Oct 10;8(1):230. doi: 10.1038/s41698-024-00728-1.
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Calibrated ribosome profiling assesses the dynamics of ribosomal flux on transcripts.校准核糖体谱分析评估了转录本上核糖体通量的动态变化。
Nat Commun. 2024 Aug 26;15(1):7061. doi: 10.1038/s41467-024-51258-0.
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Identification of phosphorylated small ORF-encoded peptides in Hep3B cells by LC/MS/MS.通过 LC/MS/MS 鉴定 Hep3B 细胞中磷酸化的小 ORF 编码肽。
J Proteomics. 2024 Jul 15;303:105214. doi: 10.1016/j.jprot.2024.105214. Epub 2024 May 31.
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OpenProt 2.0 builds a path to the functional characterization of alternative proteins.OpenProt 2.0 为探索替代蛋白的功能特性开辟了道路。
Nucleic Acids Res. 2024 Jan 5;52(D1):D522-D528. doi: 10.1093/nar/gkad1050.
8
The microprotein encoded by exosomal lncAKR1C2 promotes gastric cancer lymph node metastasis by regulating fatty acid metabolism.外泌体 lncAKR1C2 编码的微蛋白通过调节脂肪酸代谢促进胃癌淋巴结转移。
Cell Death Dis. 2023 Oct 30;14(10):708. doi: 10.1038/s41419-023-06220-1.
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The development of proximity labeling technology and its applications in mammals, plants, and microorganisms.邻近标记技术的发展及其在哺乳动物、植物和微生物中的应用。
Cell Commun Signal. 2023 Sep 30;21(1):269. doi: 10.1186/s12964-023-01310-1.
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iScience. 2023 Aug 7;26(9):107558. doi: 10.1016/j.isci.2023.107558. eCollection 2023 Sep 15.