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穿心莲内酯生物活性的计算方法及分子动力学分析 针对…… (原文结尾不完整)

Computational methodology and molecular dynamics analysis of andrographolide bioactivity against .

作者信息

Lin Min, He Lihui, Ye Guodong, Zhao Xiaotian

机构信息

Department of Dermatology, Chengdu Second Peoples Hospital, Chengdu, China.

Department of Pharmacy, Chengdu Second Peoples Hospital, Chengdu, China.

出版信息

Front Chem. 2025 Jun 11;13:1627758. doi: 10.3389/fchem.2025.1627758. eCollection 2025.

Abstract

(formerly known as ) is a Gram-positive anaerobic bacterium that is frequently found in sebaceous glands and human skin hair follicles. Although it is a normal component of the skin microbiota, acne may result from its overgrowth in specific situations. Andrographis paniculate, a traditional Chinese herb, contains a diterpenoid compound called andrographolide (AGP), which has anti-inflammatory, antibacterial and antioxidant. AGP can strengthen the skin barrier functions by preventing the release of inflammatory factors like TNF-α and IL-6. It has also shown that its antibacterial qualities can inhibit pathogens such as In this study, through the use of the quantum chemistry approach, we investigated AGP in DMSO and gas phase, in connection to the geometric foundations and energy dynamics by Density Functional Theory (DFT). Furthermore, this work has been carried out on the structural analysis by orbital examination and electrostatic potential (ESP) assessment. Subsequently, we derived the molecular interactions utilizing the independent gradient model within Hirshfeld molecular density partitioning (IGMH). Additionally, the stability and interaction of AGP and fusidic acid with the protein lipase of have been investigated by molecular docking and molecular dynamics simulations. This study might provide a fresh perspective for investigating an effective extraction process via methodological analytical discussions.

摘要

(曾用名 )是一种革兰氏阳性厌氧菌,常见于皮脂腺和人类皮肤毛囊中。虽然它是皮肤微生物群的正常组成部分,但在特定情况下其过度生长可能导致痤疮。穿心莲,一种传统的中国草药,含有一种名为穿心莲内酯(AGP)的二萜类化合物,具有抗炎、抗菌和抗氧化作用。AGP可以通过阻止TNF-α和IL-6等炎症因子的释放来增强皮肤屏障功能。研究还表明,其抗菌特性可以抑制诸如 等病原体。在本研究中,通过使用量子化学方法,我们在二甲基亚砜和气相中研究了AGP,并通过密度泛函理论(DFT)研究了其几何基础和能量动力学。此外,这项工作还通过轨道检查和静电势(ESP)评估进行了结构分析。随后,我们利用Hirshfeld分子密度分区(IGMH)中的独立梯度模型推导了分子相互作用。此外,还通过分子对接和分子动力学模拟研究了AGP和夫西地酸与 的蛋白脂肪酶的稳定性和相互作用。本研究可能通过方法学分析讨论为研究有效的提取过程提供新的视角。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/93a2/12187781/41543d4a81e9/fchem-13-1627758-g001.jpg

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