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并且 是与种系遗传的母源DNA甲基化相关的人胎盘特异性印记基因。

and are human placenta-specific imprinted genes associated with germline-inherited maternal DNA methylation.

作者信息

Daskeviciute Dagne, Sainty Becky, Chappell-Maor Louise, Bone Caitlin, Russell Sarah, Iglesias-Platas Isabel, Arnaud Philippe, Monteagudo-Sánchez Ana, Greenberg Maxim V C, Chen Keran, Manerao-Azua Africa, Perez de Nanclares Guiomar, Lartey Jon, Monk David

机构信息

Biomedical Research Centre, School of Biological Sciences, University of East Anglia, Norwich, UK.

Neonatology Department, BCNatal - Centre de Medicina Maternofetal i Neonatologia de Barcelona, Institut de Recerca Sant Joan de Déu, Barcelona, Spain.

出版信息

Epigenetics. 2025 Dec;20(1):2523191. doi: 10.1080/15592294.2025.2523191. Epub 2025 Jun 26.

DOI:10.1080/15592294.2025.2523191
PMID:40568952
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12203861/
Abstract

Genomic imprinting is the parent-of-origin specific monoallelic expression of genes that result from complex epigenetic interactions. It is often achieved by monoallelic 5-methylcytosine, resulting in the formation of differentially methylated regions (DMRs). These show a bias towards oocyte-derived methylation and survive reprogramming in the pre-implantation embryo. Imprinting is widespread in the human placenta. We have recently performed whole-genome screens for novel imprinted placenta-specific germline DMRs (gDMRs) by comparing methylomes of gametes, blastocysts and various somatic tissues, including placenta. We observe that, unlike conventional imprinting, for which methylation at gDMRs is observed in all tissues, placenta-specific imprinting is associated with transient gDMRs, present only in the pre-implantation embryo and extra-embryonic lineages. To expand the list of imprinted genes subject to placenta-specific imprinting, we reinvestigated our list of candidate loci and characterized two novel imprinted genes, and , both of which display polymorphic imprinting. Interrogation of placenta single-cell RNA-seq datasets, as well as cell-type methylation profiles, revealed complex cell-type specificity. We further interrogated their methylation and expression in placental samples from complicated pregnancies, but failed to identify differences between intrauterine growth restricted or pre-eclamptic samples and controls, suggesting they are not involved in these conditions.

摘要

基因组印记是由复杂的表观遗传相互作用导致的基因的亲本来源特异性单等位基因表达。它通常通过单等位基因5-甲基胞嘧啶来实现,从而导致差异甲基化区域(DMRs)的形成。这些区域显示出偏向于卵母细胞来源的甲基化,并在植入前胚胎的重编程过程中得以保留。印记在人类胎盘中广泛存在。我们最近通过比较配子、囊胚和包括胎盘在内的各种体细胞组织的甲基化组,对新的印记胎盘特异性种系DMRs(gDMRs)进行了全基因组筛选。我们观察到,与传统印记不同,传统印记中gDMRs的甲基化在所有组织中都能观察到,而胎盘特异性印记与仅存在于植入前胚胎和胚外谱系中的瞬时gDMRs相关。为了扩大受胎盘特异性印记影响的印记基因列表,我们重新研究了我们的候选基因座列表,并鉴定了两个新的印记基因, 和 ,它们都显示出多态性印记。对胎盘单细胞RNA测序数据集以及细胞类型甲基化谱的研究揭示了复杂的细胞类型特异性。我们进一步研究了它们在复杂妊娠胎盘样本中的甲基化和表达情况,但未能在宫内生长受限或先兆子痫样本与对照之间发现差异,这表明它们不参与这些情况。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ff5e/12203861/3745e7cb5f6c/KEPI_A_2523191_F0005_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ff5e/12203861/585b75591399/KEPI_A_2523191_F0001_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ff5e/12203861/a5722504b415/KEPI_A_2523191_F0002_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ff5e/12203861/41e8edb62852/KEPI_A_2523191_F0003_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ff5e/12203861/d2fb34be2255/KEPI_A_2523191_F0004_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ff5e/12203861/3745e7cb5f6c/KEPI_A_2523191_F0005_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ff5e/12203861/585b75591399/KEPI_A_2523191_F0001_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ff5e/12203861/a5722504b415/KEPI_A_2523191_F0002_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ff5e/12203861/41e8edb62852/KEPI_A_2523191_F0003_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ff5e/12203861/d2fb34be2255/KEPI_A_2523191_F0004_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ff5e/12203861/3745e7cb5f6c/KEPI_A_2523191_F0005_OC.jpg

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本文引用的文献

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Non-canonical imprinting, manifesting as post-fertilization placenta-specific parent-of-origin dependent methylation, is not conserved in humans.非经典印记表现为受精后胎盘特异性的亲本来源依赖性甲基化,在人类中并不保守。
Hum Mol Genet. 2025 Mar 20;34(7):626-638. doi: 10.1093/hmg/ddaf009.
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Non-canonical imprinting in the spotlight.非经典印记成为焦点。
Development. 2023 Jun 15;150(12). doi: 10.1242/dev.201087. Epub 2023 Jun 13.
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Aberrant hypomethylation at imprinted differentially methylated regions is involved in biparental placental mesenchymal dysplasia.
印迹差异甲基化区域的异常低甲基化与双亲性胎盘间充质发育不良有关。
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