Li Bintao, Jiang Lan, Johnson Timothy, Wang Guangdong, Sun Wei, Wei Gehong, Jiao Shuo, Gu Jie, Tiedje James, Qian Xun
Interdisciplinary Research Center for Soil Microbial Ecology and Land Sustainable Productivity in Dry Areas, Northwest A&F University, Shaanxi 712100, China.
Key Laboratory of Plant Nutrition and Agro-environment in Northwest China, Ministry of Agriculture and Rural Affairs, Northwest A&F University, Shaanxi 712100, China.
Sci Adv. 2025 Jun 27;11(26):eadt8073. doi: 10.1126/sciadv.adt8073.
Livestock farming consumes more than 70% of global antibiotics annually, making livestock manures an important vector of anthropogenically influenced antibiotic resistance genes (ARGs). The global pattern of the livestock resistome, its driving mechanisms, and transmission potential to the clinic are not well assessed. We analyzed 4017 livestock manure metagenomes from 26 countries and constructed a comprehensive catalog of livestock ARGs and metagenome-assembled genomes. Livestock resistome is a substantial reservoir of known (2291 subtypes) and latent ARGs (3166 subtypes) and is highly connectable to human resistomes. We depicted the global pattern of livestock resistome and prevalence of clinically critical ARGs, highlighting the role of farm and human antibiotic stewardship in shaping livestock resistome. We developed a risk-assessment framework by integrating mobility potential, clinical significance, and host pathogenic relevance, and prioritized higher risk livestock ARGs, producing a predictive global map of livestock resistome risks that can help guide research and policy.
畜牧业每年消耗全球70%以上的抗生素,这使得家畜粪便成为人为影响抗生素抗性基因(ARGs)的重要载体。全球家畜抗性组的格局、其驱动机制以及向临床的传播潜力尚未得到充分评估。我们分析了来自26个国家的4017份家畜粪便宏基因组,并构建了家畜ARGs和宏基因组组装基因组的综合目录。家畜抗性组是已知(2291个亚型)和潜在ARGs(3166个亚型)的重要储存库,并且与人类抗性组高度相关。我们描绘了全球家畜抗性组格局和临床关键ARGs的流行情况,强调了养殖场和人类抗生素管理在塑造家畜抗性组中的作用。我们通过整合移动潜力、临床意义和宿主致病相关性,开发了一个风险评估框架,并对高风险家畜ARGs进行了优先级排序,绘制了一份预测性的全球家畜抗性组风险地图,可帮助指导研究和政策制定。