基于CEP55/E2F1/hsa-let-7b-5p/TMPO-AS1轴的ceRNA网络在肺腺癌吸烟者中促进预后不良的计算机模拟分析
In-silico analysis of CEP55/E2F1/hsa-let-7b-5p/TMPO-AS1 axis-based ceRNA network promoting poor prognosis in lung adenocarcinoma smokers.
作者信息
Vats Prerna, Nirmal Sakshi, Bamrah Gurpreet, Srivastava Saurabh, Nema Rajeev
机构信息
Department of Biosciences, Manipal University Jaipur, Dehmi Kalan, Jaipur-Ajmer Expressway, Jaipur, Rajasthan, 303007, India.
出版信息
Bioimpacts. 2025 Apr 16;15:30585. doi: 10.34172/bi.30585. eCollection 2025.
INTRODUCTION
Smoking causes severe lung adenocarcinoma. High CEP55 expression correlates with clinico-pathological features, suggesting the mRNA/miRNA/lncRNA-ceRNA network's crucial to prognosis.
METHODS
The study used databases like TIMER 2.0, UALCAN, OncoMX, GEPIA2, OncoDB, ENCORI, KM Plotter, TNMplot, CancerSEA, CellTracer, GENI, Intogen, miRNet, TISIDB, GSCA, the Enrichr, HDOCK, and LigPlot databases to analyze CEP55 and associated ceRNA expression in lung cancer tumors and normal tissues.
RESULTS
The CEP55 gene is overexpressed in both lung squamous cell carcinoma (LUSC) and adenocarcinoma (LUAD). Findings suggested that overexpression of CEP55 has a poor prognosis in terms of overall survival (OS) (HR=1.63, CI=1.44-1.84, =1.4e-15), first progression (FP) (HR=1.81, CI=1.52-2.15, =6.4e-12), and post-progression survival (PPS) (HR=1.141, CI=1.14-1.74, =00012). Particularly, high CEP55 expression is significantly associated with OS+LUAD patients (HR=1.55, CI=1.3-1.84, =7.2e-07) and those with OS+LUAD smokers (HR=1.49, CI=1.15-1.94, =0.0026). The study found a strong link between lncRNA-TMPO-AS1 overexpression and poor prognosis in LUAD+smokers, and hsa-let-7b-5p downexpression was associated with poor survival in LUAD. The least binding energy or most favourable interaction score between hsa-let-7b-5p and CEP55 was found to be -124.52 kcal/mol.
CONCLUSION
Smokers with lung adenocarcinoma had worse prognoses due to higher E2F1, CEP55, and TMPO-AS1 levels. Also, TMPO-AS1 sponge formation with hsa-let-7b-5p may be the cause of this feedback loop.
引言
吸烟会导致严重的肺腺癌。高CEP55表达与临床病理特征相关,提示mRNA/miRNA/lncRNA-ceRNA网络对预后至关重要。
方法
本研究使用了TIMER 2.0、UALCAN、OncoMX、GEPIA2、OncoDB、ENCORI、KM Plotter、TNMplot、CancerSEA、CellTracer、GENI、Intogen、miRNet、TISIDB、GSCA、Enrichr、HDOCK和LigPlot等数据库,分析肺癌肿瘤组织和正常组织中CEP55及相关ceRNA的表达情况。
结果
CEP55基因在肺鳞状细胞癌(LUSC)和腺癌(LUAD)中均过表达。研究结果表明,CEP55过表达在总生存期(OS)(HR=1.63,CI=1.44-1.84,P=1.4e-15)、首次进展期(FP)(HR=1.81,CI=1.52-2.15,P=6.4e-12)和进展后生存期(PPS)(HR=1.141,CI=1.14-1.74,P=0.0012)方面预后较差。特别是,高CEP55表达与OS+LUAD患者(HR=1.55,CI=1.3-1.84,P=7.2e-07)以及OS+LUAD吸烟者(HR=1.49,CI=1.15-1.94,P=0.0026)显著相关。研究发现lncRNA-TMPO-AS1过表达与LUAD+吸烟者的不良预后密切相关,而hsa-let-7b-5p表达下调与LUAD患者的不良生存相关。hsa-let-7b-5p与CEP55之间的最小结合能或最有利相互作用得分被发现为-124.52 kcal/mol。
结论
肺腺癌吸烟者因E2F1、CEP55和TMPO-AS1水平较高而预后较差。此外,TMPO-AS1与hsa-let-7b-5p形成海绵状结构可能是这种反馈回路的原因。
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