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扰动组学:基于CRISPR-Cas筛选的药物靶点发现功能基因组学方法。

Perturbomics: CRISPR-Cas screening-based functional genomics approach for drug target discovery.

作者信息

Park Byung-Sun, Lee Mieun, Kim Jaeyeol, Kim Tackhoon

机构信息

Medicinal Materials Research Center, Korea Institute of Science and Technology, Seoul, Republic of Korea.

Department of Life Sciences, Korea University, Seoul, Republic of Korea.

出版信息

Exp Mol Med. 2025 Jul 1. doi: 10.1038/s12276-025-01487-0.

Abstract

Despite more than two decades since the completion of the first draft of the Human Genome Project, a substantial proportion of human genes remain poorly characterized in terms of their functions. Functional genomics aims to elucidate the roles and interactions of genes and genetic elements, providing insights into their involvement in various biological processes. In this context, the perturbomics approach-a systematic analysis of phenotypic changes resulting from gene function modulation-offers valuable insights into the function of unannotated genes. With the advent of CRISPR-Cas-based genome and epigenome editing, CRISPR screens have become the method of choice for perturbomics studies, enabling the identification of target genes whose modulation may hold therapeutic potential for diseases such as cancer, cardiovascular disorders and neurodegeneration. These findings contribute to the development of targeted drug therapies and the design of gene and cell therapies for regenerative medicine. Here we highlight recent technical advances in CRISPR-based perturbomics, focusing on more physiologically relevant, single-cell-level analyses and their successful applications in discovering novel therapeutic strategies.

摘要

尽管人类基因组计划初稿完成已有二十多年,但仍有相当一部分人类基因的功能特征尚不明确。功能基因组学旨在阐明基因和遗传元件的作用及相互作用,深入了解它们在各种生物过程中的参与情况。在此背景下,扰动组学方法——对基因功能调控引起的表型变化进行系统分析——为未注释基因的功能提供了有价值的见解。随着基于CRISPR-Cas的基因组和表观基因组编辑技术的出现,CRISPR筛选已成为扰动组学研究的首选方法,能够识别其调控可能对癌症、心血管疾病和神经退行性疾病等具有治疗潜力的靶基因。这些发现有助于开发靶向药物疗法以及设计用于再生医学的基因和细胞疗法。在此,我们重点介绍基于CRISPR的扰动组学的最新技术进展,重点关注更具生理相关性的单细胞水平分析及其在发现新型治疗策略方面的成功应用。

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