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通过基因组技术推进观赏植物育种:机遇、挑战与未来方向。

Advancing ornamental plant breeding through genomic technologies: opportunities, challenges, and future directions.

作者信息

K Murshid Muhammed P, Pagariya Madhuri C, Jadhav Pritam R, Gawade Nikita S, Sarode Dipak K, Karkute Suhas Gorakh, Kardile Hemant B, Deshmukh Rupesh, Penna Suprasanna, Kawar Prashant G

机构信息

Crop Improvement Division, ICAR-Directorate of Floricultural Research, Pune, India.

Department of Botany, BJS Arts, Science and Commerce College, Bakori Phata, Wagholi, Pune, Maharashtra, 412 207, India.

出版信息

Funct Integr Genomics. 2025 Jul 1;25(1):140. doi: 10.1007/s10142-025-01640-y.

DOI:10.1007/s10142-025-01640-y
PMID:40590986
Abstract

The ornamental plants constitute an important sector of horticulture industry, which are worth billions of dollars worldwide. There is a growing demand for new and improved cultivars and hence, breeders employ new tools and methods to address the problem of plant improvement. Recent advancements in Ornamental plant genomics have seen a great revolution due to new technologies of whole genome sequencing which have created previously unheard-of breeding program prospects. Research into gene regulation, genomic variations, genome evolution, and other biological processes are now aided by the use of complete genome sequencing data. The assembly of high-quality genomes for various ornamental species has facilitated the identification of genes controlling desirable traits such as flower color, shape, fragrance, biotic and abiotic stress resistance. The CRISPR/Cas9 based genome editing technology has offered immense scope for ornamental plant improvement through the enhancement of floral characteristics. Herein, we discuss how these genomic resources can be leveraged to improve breeding efficiency, accelerate the development of novel cultivars to augment the sustainability of the ornamental plant industry. This review aims to provide a viewpoint for the application of whole genome sequencing in ornamental plant breeding, highlighting the opportunities, challenges, and future prospects.

摘要

观赏植物构成了园艺产业的一个重要部门,在全球价值数十亿美元。对新的和改良品种的需求不断增长,因此,育种者采用新的工具和方法来解决植物改良问题。由于全基因组测序新技术,观赏植物基因组学最近取得了巨大进展,创造了前所未有的育种计划前景。现在,利用完整的基因组测序数据有助于对基因调控、基因组变异、基因组进化和其他生物学过程进行研究。为各种观赏物种组装高质量基因组有助于鉴定控制理想性状的基因,如花色、花形、花香、生物和非生物胁迫抗性。基于CRISPR/Cas9的基因组编辑技术通过增强花卉特性为观赏植物改良提供了巨大空间。在此,我们讨论如何利用这些基因组资源提高育种效率,加速新品种的开发,以增强观赏植物产业的可持续性。本综述旨在为全基因组测序在观赏植物育种中的应用提供一个观点,突出机遇、挑战和未来前景。

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本文引用的文献

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Chromosome-level genome assembly of the threatened ornamental plant Hibiscus yunnanensis.濒危观赏植物云南芙蓉的染色体水平基因组组装
Sci Data. 2025 Mar 25;12(1):503. doi: 10.1038/s41597-025-04842-y.
2
A Chromosome-level genome assembly of the alpine medicinal plant Bergenia purpurascens (Saxifragaceae).高山药用植物紫花岩白菜(虎耳草科)的染色体水平基因组组装
Sci Data. 2025 Jan 21;12(1):121. doi: 10.1038/s41597-025-04473-3.
3
CGD: a multi-omics database for genomic and biological research.CGD:一个用于基因组和生物学研究的多组学数据库。
Hortic Res. 2024 Aug 21;11(11):uhae238. doi: 10.1093/hr/uhae238. eCollection 2024 Nov.
4
Phylogenomic insights into the historical biogeography, character-state evolution, and species diversification rates of Cypripedioideae (Orchidaceae).基于系统基因组学的兜兰族(兰科)历史生物地理学、性状演化及物种多样化速率研究。
Mol Phylogenet Evol. 2024 Oct;199:108138. doi: 10.1016/j.ympev.2024.108138. Epub 2024 Jul 6.
5
A high-quality haplotype genome of Michelia alba DC reveals differences in methylation patterns and flower characteristics.白兰高质量单倍型基因组揭示甲基化模式与花特征差异。
Mol Hortic. 2024 May 29;4(1):23. doi: 10.1186/s43897-024-00098-z.
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Chromosome-scale genome assembly and annotation of Cotoneaster glaucophyllus.毛叶栒子染色体水平基因组组装与注释。
Sci Data. 2024 Apr 22;11(1):406. doi: 10.1038/s41597-024-03246-8.
7
Haplotype-resolved genome assembly of the diploid Rosa chinensis provides insight into the mechanisms underlying key ornamental traits.二倍体中国蔷薇的单倍型解析基因组组装为关键观赏性状的潜在机制提供了见解。
Mol Hortic. 2024 Apr 16;4(1):14. doi: 10.1186/s43897-024-00088-1.
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BMC Plant Biol. 2024 Apr 9;24(1):255. doi: 10.1186/s12870-024-04962-4.
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Sci Rep. 2024 Feb 28;14(1):4867. doi: 10.1038/s41598-024-55498-4.