Friend S H, Gurd F R
Biochemistry. 1979 Oct 16;18(21):4620-30. doi: 10.1021/bi00588a024.
The pattern of electrostatic interactions between pairs of charge sites in sperm whale ferrimyoglobin was examined as a function of pH in terms of proton site occupancy, static solvent accessibility, and distance of separation. By grouping all examples of the most stabilizing interactions and all examples of the most destabilizing interactions, we can easily show that at pH 7.50 the former is much stronger; that is, the negative contributions to electrostatic free energy far outweigh the positive contributions. Much of the electrostatic energy of stabilization in native myoglobin is provided by specific charge-pair partners that are very highly conserved among 53 mammalian myoglobin species and is invariant substantially from pH 8.5 to 3.5. Destablizing interactions that become most significant, but not actually dominant, near the acid unfolding pH range can be recognized in emerging clusters of uncompensated positive charges. Binding of azide ion by the heme iron effectively reduces the most prominent destabilizing set of such interactions. In general, thoe charged residues that experience the largest summed stabilizing interactions with other groups are the most conserved between species. The histidine residues, however, show their best correlation of conservation with low values of static accessibility. Although histidine residue 64 has an effective pK corresponding to the midpoint of the unfolding transition near pH 4.2 at an ionic strength of 0.10 M and so might be called a "trigger group", its interactions contribute only a modest fraction of the overall pH-dependent free energy change. An examination of the primary stabilizing interactions represented by the charge-pair partners indicates a probably major role of electrostatic interactions in the nucleation and docking stages of the condensation of the polypeptide chain into the compact native structure.
研究了抹香鲸亚铁肌红蛋白中电荷位点对之间的静电相互作用模式,该模式是质子位点占有率、静态溶剂可及性和分离距离的函数,并考察了其随pH值的变化情况。通过对所有最稳定相互作用的例子和所有最不稳定相互作用的例子进行分组,我们可以很容易地表明,在pH 7.50时,前者要强得多;也就是说,对静电自由能的负贡献远远超过正贡献。天然肌红蛋白中大部分稳定化的静电能是由特定的电荷对伙伴提供的,这些伙伴在53种哺乳动物肌红蛋白物种中高度保守,并且在pH 8.5至3.5的范围内基本不变。在酸性展开pH范围附近变得最为显著但并非实际占主导地位的不稳定相互作用,可以在未补偿正电荷的新兴簇中识别出来。血红素铁与叠氮离子的结合有效地减少了这类最突出的不稳定相互作用。一般来说,那些与其他基团具有最大稳定相互作用总和的带电残基在物种间最为保守。然而,组氨酸残基的保守性与低静态可及性值具有最佳的相关性。尽管组氨酸残基64在离子强度为0.10 M时具有对应于pH 4.2附近展开转变中点的有效pK,因此可能被称为“触发基团”,但其相互作用仅对整体pH依赖性自由能变化贡献了适度的一部分。对由电荷对伙伴代表的主要稳定相互作用的研究表明,静电相互作用在多肽链凝聚成紧密的天然结构的成核和对接阶段可能起主要作用。