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卷曲乳杆菌菌株中细菌素基因的比较基因组分析

Comparative genomic analysis of bacteriocin genes in Lactobacillus crispatus strains.

作者信息

Santarelli Giulia, Sanguinetti Maurizio, Delogu Giovanni, De Maio Flavio

机构信息

Dipartimento di Scienze Biotecnologiche di Base, Cliniche Intensivologiche e Perioperatorie-Sezione di Microbiologia, Università Cattolica del Sacro Cuore, Rome, 00168, Italy.

Dipartimento Scienze di Laboratorio ed Ematologiche, Fondazione Policlinico Universitario "A. Gemelli", IRCCS, Rome, 00168, Italy.

出版信息

Sci Rep. 2025 Jul 1;15(1):20798. doi: 10.1038/s41598-025-08321-7.

DOI:10.1038/s41598-025-08321-7
PMID:40594829
Abstract

Lactobacillus crispatus, a key member of the vaginal microbiota, exhibits strain-specific diversity with important implications for host-microbe interactions and probiotic potential. This study investigates the genomic relationships and bacteriocin diversity across 95 L. crispatus strains to elucidate the mechanisms underlying strain-specific adaptation and microbial competitiveness. Using publicly available data from NCBI, we applied BAGEL4 and core genome multilocus sequence typing (cgMLST) approaches to identify and characterize bacteriocin genes, revealing a high level of conservation of major bacteriocins among strains. Analysis of nucleotide polymorphisms within bacteriocin-encoding sequences showed that these genes are generally conserved, likely due to strong purifying selection. These findings suggest that bacteriocins in L. crispatus are functionally conserved, underscoring their potential role in maintaining vaginal health through microbial competition and pathogen exclusion.

摘要

卷曲乳杆菌是阴道微生物群的关键成员,表现出菌株特异性多样性,对宿主-微生物相互作用和益生菌潜力具有重要意义。本研究调查了95株卷曲乳杆菌菌株之间的基因组关系和细菌素多样性,以阐明菌株特异性适应和微生物竞争力的潜在机制。利用来自NCBI的公开数据,我们应用BAGEL4和核心基因组多位点序列分型(cgMLST)方法来鉴定和表征细菌素基因,结果显示主要细菌素在菌株之间具有高度保守性。对细菌素编码序列内的核苷酸多态性分析表明,这些基因通常是保守的,这可能是由于强大的纯化选择所致。这些发现表明,卷曲乳杆菌中的细菌素在功能上是保守的,突出了它们通过微生物竞争和病原体排除在维持阴道健康方面的潜在作用。

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本文引用的文献

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The evolving facets of vaginal microbiota transplantation: reinvigorating the unexplored frontier amid complex challenges.阴道微生物群移植的不断发展:在复杂挑战中重振未探索的前沿。
Arch Microbiol. 2024 Jun 15;206(7):306. doi: 10.1007/s00203-024-04024-1.
2
Ultrafast one-pass FASTQ data preprocessing, quality control, and deduplication using fastp.使用fastp进行超快速单通道FASTQ数据预处理、质量控制和重复数据删除。
Imeta. 2023 May 8;2(2):e107. doi: 10.1002/imt2.107. eCollection 2023 May.
3
Bacteriocin diversity, function, discovery and application as antimicrobials.
细菌素的多样性、功能、发现及其作为抗菌剂的应用。
Nat Rev Microbiol. 2024 Sep;22(9):556-571. doi: 10.1038/s41579-024-01045-x. Epub 2024 May 10.
4
The mobilome of M247 includes two novel genetic elements: Tn coding for a putative bacteriocin and the siphovirus prophage ΦM247.M247 的移动元件包括两个新的遗传元件:编码一种假定细菌素的 Tn 和 siphovirus 噬菌体 prophage ΦM247。
Microb Genom. 2023 Dec;9(12). doi: 10.1099/mgen.0.001150.
5
The core genome evolution of Lactobacillus crispatus as a driving force for niche competition in the human vaginal tract.阴道乳杆菌核心基因组进化是其在人体阴道腔中生态位竞争的驱动力。
Microb Biotechnol. 2023 Sep;16(9):1774-1789. doi: 10.1111/1751-7915.14305. Epub 2023 Jul 25.
6
Microbial diversity in the vaginal microbiota and its link to pregnancy outcomes.阴道微生物组中的微生物多样性及其与妊娠结局的关系。
Sci Rep. 2023 Jun 4;13(1):9061. doi: 10.1038/s41598-023-36126-z.
7
Use of probiotic lactobacilli in the treatment of vaginal infections: and investigations.应用益生菌乳杆菌治疗阴道感染:临床和实验研究。
Front Cell Infect Microbiol. 2023 Apr 3;13:1153894. doi: 10.3389/fcimb.2023.1153894. eCollection 2023.
8
Screening and characterization of vaginal fluid donations for vaginal microbiota transplantation.阴道液供体的筛选和鉴定用于阴道微生物群移植。
Sci Rep. 2022 Oct 26;12(1):17948. doi: 10.1038/s41598-022-22873-y.
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Lactobacillus crispatus M247 oral administration: Is it really an effective strategy in the management of papillomavirus-infected women?卷曲乳杆菌M247口服给药:它真的是治疗乳头瘤病毒感染女性的有效策略吗?
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