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用于山羊痘病毒诊断的环介导等温扩增(LAMP)技术的评估与优化及其与PCR方法的比较

Evaluation and Optimization of Loop-Mediated Isothermal Amplification (LAMP) Technique for Capripoxvirus Diagnosis and Its Comparison with PCR Method.

作者信息

Edrisi M, Varshovi H R, Safi S, Shahhoseiny M H

机构信息

Department of Pathobiology, Faculty of Specialized Veterinary Sciences, Science and Research Branch, Islamic Azad University, Poonak, Hesarak, Tehran, Iran.

Razi Vaccine and Serum Research Institute, Agricultural Research, Education and Extension Organization (AREEO), Karaj, Iran.

出版信息

Arch Razi Inst. 2024 Dec 31;79(6):1183-1190. doi: 10.32592/ARI.2024.79.6.1183. eCollection 2024 Dec.

DOI:10.32592/ARI.2024.79.6.1183
PMID:40599456
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12207928/
Abstract

Sheep pox (SP), goat pox (GP), and lumpy skin disease (LSD) are caused by subspecies of the capripox virus (CaPVs). They are significant pathogens of sheep, goats, and cattle. The causative agent is the capripox virus (CaPV), which was first isolated in South Africa. The viruses responsible for sheep pox (SP), goat pox (GP), and lumpy skin disease (LSD) are morphologically indistinguishable and have been adapted to different host species (4). Serologically, distinguishing between these viruses is challenging, and cross-immunity exists among them (2). The present study reports the evaluation and optimization of a novel loop-mediated isothermal amplification (LAMP) technique for the rapid detection of capripox viruses (CaPVs) and compares it with the polymerase chain reaction (PCR) method. LAMP primers were selected from the P32-protected gene of CaPV. The Safe-Red fluorescent dye was used to monitor the color change from red to bright yellow at a wavelength of 320 nm in positive cases, and the final results were documented through electrophoresis. The proposed LAMP test for the capripox virus demonstrated high specificity and did not cross react with other viruses in the Poxviridae family that present similar clinical symptoms. The optimized LAMP test was then compared with the PCR. The diagnostic sensitivity of LAMP and PCR was found to be identical (100%). The specificity of the LAMP test was evaluated using 30 samples of cow skin that were suspected of lumpy skin disease, along with16 additional samples, including nine positive references, fivenegative references, and two negative controls. A negative reference sample was used to assess the diagnostic sensitivity of LSDV. The proposed LAMP test is simple to implement, cost-effective, and highly sensitive, making it particularly well-suited for the detection of the capripox virus in less developed regions, laboratories, and facilities with limited resources.

摘要

绵羊痘(SP)、山羊痘(GP)和结节性皮肤病(LSD)由山羊痘病毒(CaPVs)的亚种引起。它们是绵羊、山羊和牛的重要病原体。病原体是山羊痘病毒(CaPV),该病毒最初在南非分离得到。导致绵羊痘(SP)、山羊痘(GP)和结节性皮肤病(LSD)的病毒在形态上无法区分,并且已适应不同的宿主物种(4)。在血清学上,区分这些病毒具有挑战性,并且它们之间存在交叉免疫(2)。本研究报告了一种用于快速检测山羊痘病毒(CaPVs)的新型环介导等温扩增(LAMP)技术的评估和优化,并将其与聚合酶链反应(PCR)方法进行比较。LAMP引物选自CaPV的P32保护基因。使用Safe-Red荧光染料监测阳性病例在320nm波长下从红色到亮黄色的颜色变化,最终结果通过电泳记录。所提出的用于山羊痘病毒的LAMP检测显示出高特异性,并且不会与痘病毒科中呈现相似临床症状的其他病毒发生交叉反应。然后将优化后的LAMP检测与PCR进行比较。发现LAMP和PCR的诊断敏感性相同(100%)。使用30份疑似结节性皮肤病的牛皮样本以及另外16份样本评估LAMP检测的特异性,其中包括9份阳性参考样本、5份阴性参考样本和2份阴性对照。使用阴性参考样本评估LSDV的诊断敏感性。所提出的LAMP检测易于实施、具有成本效益且高度灵敏,使其特别适合在欠发达地区、资源有限的实验室和设施中检测山羊痘病毒。

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本文引用的文献

1
Molecular characterization of lumpy skin disease virus in Iran (2014-2018).伊朗(2014-2018 年)块状皮肤病病毒的分子特征。
Arch Virol. 2021 Aug;166(8):2279-2283. doi: 10.1007/s00705-021-05119-6. Epub 2021 May 31.
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Loop-mediated isothermal amplification for detection of nucleic acids.用于核酸检测的环介导等温扩增技术。
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Detection of capripoxvirus DNA using a novel loop-mediated isothermal amplification assay.利用新型环介导等温扩增检测技术检测羊痘病毒 DNA。
BMC Vet Res. 2013 May 1;9:90. doi: 10.1186/1746-6148-9-90.
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Development of a loop-mediated isothermal amplification assay for rapid detection of capripoxviruses.环介导等温扩增法快速检测羊痘病毒的研究。
J Clin Microbiol. 2012 May;50(5):1613-20. doi: 10.1128/JCM.06796-11. Epub 2012 Feb 22.
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Loop-mediated isothermal amplification assays for detecting shiga toxin-producing Escherichia coli in ground beef and human stools.用于检测碎牛肉和人类粪便中产志贺毒素大肠杆菌的环介导等温扩增检测法。
J Clin Microbiol. 2012 Jan;50(1):91-7. doi: 10.1128/JCM.05612-11. Epub 2011 Oct 26.
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Review: lumpy skin disease: an emerging threat to Europe, the Middle East and Asia.综述:块状皮肤病:对欧洲、中东和亚洲的新威胁。
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Real time PCR method for simultaneous detection, quantitation and differentiation of capripoxviruses.实时 PCR 方法用于同时检测、定量和区分羊痘病毒。
J Virol Methods. 2011 Jan;171(1):134-40. doi: 10.1016/j.jviromet.2010.10.014. Epub 2010 Oct 26.
8
Loop-mediated isothermal amplification (LAMP): a rapid, accurate, and cost-effective diagnostic method for infectious diseases.环介导等温扩增技术(LAMP):一种用于传染病的快速、准确且经济高效的诊断方法。
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Colorimetric detection of loop-mediated isothermal amplification reaction by using hydroxy naphthol blue.利用羟基萘酚蓝比色法检测环介导等温扩增反应
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Capripoxviruses: an emerging worldwide threat to sheep, goats and cattle.山羊痘病毒:对绵羊、山羊和牛构成全球范围新威胁的病原体。
Transbound Emerg Dis. 2008 Sep;55(7):263-72. doi: 10.1111/j.1865-1682.2008.01043.x.