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组蛋白1及其同源物的多维分解与集成建模:采用综合方法详述结构与生物学功能

Multidimensional Decomposition and Ensemble Modeling of Histatin 1 and Its Siblings: Detailing Structure and Biological Function Using an Integrative Approach.

作者信息

Svensson Oskar, Gerelli Yuri, Skepö Marie

机构信息

Division of Computational Chemistry, Department of Chemistry, Science for Life Laboratory, Lund University, P.O. Box 124, SE-221 00 Lund, Sweden.

NanoLund, Lund University, Box 118, 22100 Lund, Sweden.

出版信息

J Chem Inf Model. 2025 Jul 14;65(13):7089-7101. doi: 10.1021/acs.jcim.5c00854. Epub 2025 Jul 2.

DOI:10.1021/acs.jcim.5c00854
PMID:40600658
Abstract

Histatins are a family of multifunctional, cationic histidine-rich saliva peptides. The most prominently represented are Histatin 1, Histatin 3, and Histatin 5. Despite considerable similarities in primary structure, the three members are known to display varied antimicrobial properties and healing abilities. This study aims to provide a detailed structural comparison of Histatin 1, Histatin 3, and Histatin 5, as well as a thorough investigation into the variation caused to the conformational ensemble of Histatin 1 upon phosphorylation. The study applies molecular dynamics simulation, small-angle X-ray scattering, circular dichroism, bioinformatics tools, and neutron reflectometry. A multidimensional decomposition technique and its connection to clustering methods are also presented. It was observed that the phosphorylation of Histatin 1 profoundly shifts the conformational ensemble and may act as a molecular switch that facilitates tooth enamel binding. Observations are provided on the killing mechanisms of Histatins concerning self-association and membrane rupturing.

摘要

富组蛋白是一类多功能的、富含阳离子组氨酸的唾液肽家族。其中最具代表性的是富组蛋白1、富组蛋白3和富组蛋白5。尽管这三个成员在一级结构上有相当大的相似性,但已知它们具有不同的抗菌特性和愈合能力。本研究旨在对富组蛋白1、富组蛋白3和富组蛋白5进行详细的结构比较,并深入研究富组蛋白1磷酸化后其构象集合所产生的变化。该研究应用了分子动力学模拟、小角X射线散射、圆二色性、生物信息学工具和中子反射测量法。还介绍了一种多维分解技术及其与聚类方法的联系。研究发现,富组蛋白1的磷酸化会深刻改变其构象集合,并可能作为一种分子开关促进与牙釉质结合。文中还提供了关于富组蛋白自聚集和膜破裂的杀伤机制观察结果。

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本文引用的文献

1
Melittin-Induced Structural Transformations in DMPG and DMPS Lipid Membranes: A Langmuir Monolayer and AFM Study.蜂毒肽诱导的二肉豆蔻酰磷脂酰甘油(DMPG)和二肉豆蔻酰磷脂酰丝氨酸(DMPS)脂质膜结构转变:一项Langmuir单分子层和原子力显微镜研究
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Histatins, proangiogenic molecules with therapeutic implications in regenerative medicine.组蛋白,在再生医学中具有治疗意义的促血管生成分子。
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Deeper Insight of the Conformational Ensemble of Intrinsically Disordered Proteins.
深入了解构象无规卷曲蛋白质的构象集合体。
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Translocation of Antimicrobial Peptides across Model Membranes: The Role of Peptide Chain Length.抗菌肽跨模型膜的转运:肽链长度的作用。
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AIUPred: combining energy estimation with deep learning for the enhanced prediction of protein disorder.AIUPred:将能量估计与深度学习相结合,以增强对蛋白质无序性的预测。
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7
Interaction of a Histidine-Rich Antimicrobial Saliva Peptide with Model Cell Membranes: The Role of Histidines.富含组氨酸的抗菌唾液肽与模型细胞膜的相互作用:组氨酸的作用。
Langmuir. 2023 Jun 6;39(22):7694-7706. doi: 10.1021/acs.langmuir.3c00498. Epub 2023 May 25.
8
Revealing the Mechanisms of Synergistic Action of Two Magainin Antimicrobial Peptides.揭示两种蛙皮抗菌肽协同作用的机制。
Front Med Technol. 2020 Dec 21;2:615494. doi: 10.3389/fmedt.2020.615494. eCollection 2020.
9
Applications and evolution of melittin, the quintessential membrane active peptide.蜂毒素的应用与演变:一种典型的膜活性肽。
Biochem Pharmacol. 2021 Nov;193:114769. doi: 10.1016/j.bcp.2021.114769. Epub 2021 Sep 17.
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J Appl Crystallogr. 2021 Feb 1;54(Pt 1):343-355. doi: 10.1107/S1600576720013412.