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白细胞介素-36相关基因可预测胃癌预后。

IL-36-related genes predict prognosis of gastric cancer.

作者信息

Zhang Ying, Liu Yanbo, Guan Xin, Qu Meng, Wu Dianxiu, Liu Ning, Lin Zhengkun, Liu Yuqi, Wang Han, Yang Lijuan

机构信息

Department of Pathology, Affiliated Hospital, Beihua University, Jilin, China.

Department of Pathophysiology, Basic medical college, Beihua University, Jilin, China.

出版信息

Front Oncol. 2025 Jun 18;15:1566993. doi: 10.3389/fonc.2025.1566993. eCollection 2025.


DOI:10.3389/fonc.2025.1566993
PMID:40606972
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12213462/
Abstract

INTRODUCTION: Gastric cancer (GC) is one of the most frequently encountered malignant tumors in the clinic. Because effective early screening techniques are lacking, most patients have advanced disease at first diagnosis. The interleukin (IL)-36 family plays a vital role in regulating the immune system, inflammatory responses, and the occurrence and development of cancer. Hence, this study explored the potential role of IL-36 related genes (IL-36RGs) in GC and built a prognostic risk assessment model for GC based on IL-36RGs, which can help evaluate treatment and prognosis. METHODS: First, relevant datasets were downloaded from public databases. After processing the datasets to remove batch effects, perform differential analysis, and take intersections, IL-36-related differentially expressed genes (IL-36RDEGs) were screened. A prognostic risk model containing nine model genes was constructed based on univariate Cox and least absolute shrinkage and selection operator (LASSO) regression methods. Then, to investigate the potential biological activities of the model genes in GC, we conducted enrichment, PPI interaction network, and immune infiltration analyses. Immunohistochemical staining was conducted to validate the expression of IL-36A in GC. RESULTS: The prognostic risk model analysis revealed that mortality events in the high-risk group were substantially elevated compared to those in the low-risk group. The model demonstrated excellent predictive capability at 1, 2, and 3 years and showed the best clinical predictive performance at 3 years. Bioinformatics analysis of the model genes indicate that they primarily participate in mechanisms that promote the synthesis and secretion of cytokines in GC. And hub genes may be strongly correlated with host immune response mechanisms. According to the immunohistochemical staining results, IL-36A expression was higher in the STAD group than in the control group. CONCLUSIONS: The results of the above analysis suggest that IL-36RDEGs can serve as independent prognostic biomarkers for GC and provide insights into IL-36RGs from both bioinformatics and experimental validation perspectives.

摘要

引言:胃癌(GC)是临床上最常见的恶性肿瘤之一。由于缺乏有效的早期筛查技术,大多数患者在初次诊断时已处于疾病晚期。白细胞介素(IL)-36家族在调节免疫系统、炎症反应以及癌症的发生发展中起着至关重要的作用。因此,本研究探讨了IL-36相关基因(IL-36RGs)在胃癌中的潜在作用,并基于IL-36RGs构建了胃癌预后风险评估模型,这有助于评估治疗和预后。 方法:首先,从公共数据库下载相关数据集。在对数据集进行处理以消除批次效应、进行差异分析并取交集后,筛选出IL-36相关差异表达基因(IL-36RDEGs)。基于单变量Cox和最小绝对收缩与选择算子(LASSO)回归方法构建了包含九个模型基因的预后风险模型。然后,为了研究模型基因在胃癌中的潜在生物学活性,我们进行了富集分析、蛋白质-蛋白质相互作用(PPI)网络分析和免疫浸润分析。进行免疫组织化学染色以验证IL-36A在胃癌中的表达。 结果:预后风险模型分析显示,高风险组的死亡事件比低风险组显著增加。该模型在1年、2年和3年时显示出优异的预测能力,在3年时表现出最佳的临床预测性能。对模型基因的生物信息学分析表明,它们主要参与促进胃癌中细胞因子合成和分泌的机制。并且枢纽基因可能与宿主免疫反应机制密切相关。根据免疫组织化学染色结果,STAD组中IL-36A的表达高于对照组。 结论:上述分析结果表明,IL-36RDEGs可作为胃癌独立的预后生物标志物,并从生物信息学和实验验证的角度为IL-36RGs提供了见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1395/12213462/f2388d7b6e93/fonc-15-1566993-g008.jpg
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本文引用的文献

[1]
Anoikis-Related Long Non-Coding RNA Signatures to Predict Prognosis and Immune Infiltration of Gastric Cancer.

Bioengineering (Basel). 2024-9-5

[2]
The Immune Microenvironment Landscape of Pituitary NeuroEndocrine Tumors, a Transcriptomic Approach.

Genes (Basel). 2024-4-24

[3]
CD276-dependent efferocytosis by tumor-associated macrophages promotes immune evasion in bladder cancer.

Nat Commun. 2024-4-1

[4]
Comprehensive analysis of the function of helicobacter-associated ferroptosis gene YWHAE in gastric cancer through multi-omics integration, molecular docking, and machine learning.

Apoptosis. 2024-4

[5]
The Pro-Tumor Biological Function of IL-36α Plays an Important Role in the Tumor Microenvironment of HCC.

Cancer Manag Res. 2023-8-29

[6]
Expression of p53 as a biomarker in determining response to apatinib for advanced gastric cancer.

Front Oncol. 2023-8-15

[7]
Comparison of two hepatocyte differentiation protocols in human umbilical cord mesenchymal stem cells: In vitro study.

Tissue Cell. 2023-8

[8]
Autonomous IL-36R signaling in neutrophils activates potent antitumor effector functions.

J Clin Invest. 2023-6-15

[9]
LINC00562 drives gastric cancer development by regulating miR-4636-AP1S3 axis.

Korean J Physiol Pharmacol. 2023-5-1

[10]
Constructing a novel mitochondrial-related gene signature for evaluating the tumor immune microenvironment and predicting survival in stomach adenocarcinoma.

J Transl Med. 2023-3-13

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