Wang Huie, Liu Tianci, Wang Gang, Zhao Xiurong, Wang Chengqian, Li Fugui, Muhatai Gemingguli, Qu Lujiang
College of Animal Science and Technology, Tarim University, Alar 843300, China.
College of Animal Science and Technology, Agricultural University, Beijing 100193, China.
Animals (Basel). 2025 Jul 2;15(13):1952. doi: 10.3390/ani15131952.
This study is based on the whole gene resequencing data of 162 individuals from 16 chicken breeds. We calculated the historical effective population size (), differentiation time and genetic hybridization degree of the population to understand its historical dynamics, in order to provide a theoretical basis for the scientific protection and utilization of the germplasm resources of Baicheng Oil Chicken (BCY). The main results are as follows: using SMC++ and fastsimcoal2 software, respectively, we estimated of BCY at 46,066 in the past and inferred a divergence time of 428-548 years ago. D-statistical analysis revealed a ~7% genetic introgression from White Leghorn chicken (LH) to BCY. Notably, infiltration genes such as (potentially influencing egg production) and (possibly associated with fat deposition) were identified. These findings provide insights into BCY's demographic history and support its genetic conservation and utilization.
本研究基于16个鸡品种162个个体的全基因重测序数据。我们计算了群体的历史有效种群大小()、分化时间和遗传杂交程度,以了解其历史动态,为白城油鸡(BCY)种质资源的科学保护和利用提供理论依据。主要结果如下:分别使用SMC++和fastsimcoal2软件,我们估计BCY过去的有效种群大小为46,066,并推断出其分化时间为428 - 548年前。D统计分析显示,白来航鸡(LH)对BCY存在约7%的基因渗入。值得注意的是,鉴定出了如(可能影响产蛋)和(可能与脂肪沉积有关)等渗入基因。这些发现为BCY的种群历史提供了见解,并支持其遗传保护和利用。