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大豆(L.)中该基因家族的全基因组鉴定及盐胁迫响应表达分析

Genome-Wide Identification and Salt Stress-Responsive Expression Analysis of the Gene Family in Soybean ( L.).

作者信息

Wang Mingyu, Guan Zheyun, Wu Songquan, Zhang Jingyong, Lin Chunjing, Sun Yanyan, Shen Mingzhe, Zhang Chunbao

机构信息

College of Agriculture, Yanbian University, Yanji 133002, China.

Key Laboratory of Hybrid Soybean Breeding of the Ministry of Agriculture and Rural Affairs/Soybean Research Institute, Jilin Academy of Agricultural Sciences (Northeast Agricultural Research Center of China), Changchun 130033, China.

出版信息

Plants (Basel). 2025 Jun 30;14(13):2004. doi: 10.3390/plants14132004.

DOI:10.3390/plants14132004
PMID:40648010
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12251706/
Abstract

The plant-specific transcription factors play crucial roles in plant growth, development, and responses to abiotic stresses. However, despite their functional significance, genes remain poorly characterized in soybeans. In this study, we conducted a genome-wide analysis of the gene family and investigated their expression profiles under salt stress. We identified a total of 29 genes in the soybean genome and systematically analyzed their physicochemical properties, conserved domains, evolutionary relationships, cis-acting elements, and expression regulation patterns. Subcellular localization predictions indicated nuclear localization for most , except for and , which showed dual chloroplast-nuclear localization. A gene family expansion analysis indicated that 21 segmental duplication events were the primary driver of diversification. A phylogenetic analysis classified the genes into four subgroups, while gene structure and motif analyses revealed conserved zinc-binding domains and identified multiple cis-acting elements associated with light responsiveness, hormone signaling, and stress responses. Expression profiling showed tissue-specific expression patterns, with 13 genes differentially expressed under salt stress, including root-preferential members (e.g., , ) and leaf-preferential members (e.g., , ). This study provides a theoretical basis for further investigation of gene functions in soybean development and stress tolerance.

摘要

植物特异性转录因子在植物生长、发育以及对非生物胁迫的响应中发挥着关键作用。然而,尽管它们具有重要功能,但在大豆中这些基因的特征仍知之甚少。在本研究中,我们对该基因家族进行了全基因组分析,并研究了它们在盐胁迫下的表达谱。我们在大豆基因组中总共鉴定出29个该基因,并系统地分析了它们的理化性质、保守结构域、进化关系、顺式作用元件和表达调控模式。亚细胞定位预测表明,除了GmBPC1和GmBPC3显示叶绿体 - 细胞核双定位外,大多数基因定位于细胞核。基因家族扩展分析表明,21次片段重复事件是该基因多样化的主要驱动力。系统发育分析将该基因分为四个亚组,而基因结构和基序分析揭示了保守的锌结合结构域,并鉴定出多个与光响应、激素信号传导和胁迫响应相关的顺式作用元件。表达谱分析显示了组织特异性表达模式,其中13个该基因在盐胁迫下差异表达,包括根优先成员(例如GmBPC2、GmBPC6)和叶优先成员(例如GmBPC4、GmBPC5)。本研究为进一步研究该基因在大豆发育和胁迫耐受性中的功能提供了理论基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fbc0/12251706/f062cd7edcd9/plants-14-02004-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fbc0/12251706/c5a037566e73/plants-14-02004-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fbc0/12251706/460d1b170b65/plants-14-02004-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fbc0/12251706/204c79c41c40/plants-14-02004-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fbc0/12251706/b02462ccf03f/plants-14-02004-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fbc0/12251706/f3938321c1de/plants-14-02004-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fbc0/12251706/98e5542938e5/plants-14-02004-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fbc0/12251706/2031155c5d31/plants-14-02004-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fbc0/12251706/f062cd7edcd9/plants-14-02004-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fbc0/12251706/c5a037566e73/plants-14-02004-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fbc0/12251706/460d1b170b65/plants-14-02004-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fbc0/12251706/204c79c41c40/plants-14-02004-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fbc0/12251706/b02462ccf03f/plants-14-02004-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fbc0/12251706/f3938321c1de/plants-14-02004-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fbc0/12251706/98e5542938e5/plants-14-02004-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fbc0/12251706/2031155c5d31/plants-14-02004-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fbc0/12251706/f062cd7edcd9/plants-14-02004-g008.jpg

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本文引用的文献

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Comprehensive analysis of PLATZ family genes and their responses to abiotic stresses in Barley.大麦中 PLATZ 家族基因的综合分析及其对非生物胁迫的响应。
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GhiPLATZ17 and GhiPLATZ22, zinc-dependent DNA-binding transcription factors, promote salt tolerance in upland cotton.
锌指转录因子 GhiPLATZ17 和 GhiPLATZ22 促进陆地棉的耐盐性。
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Regulation of drought tolerance in Arabidopsis involves the PLATZ4-mediated transcriptional repression of plasma membrane aquaporin PIP2;8.调控拟南芥耐旱性涉及 PLATZ4 介导的质膜水通道蛋白 PIP2;8 的转录抑制。
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