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肯尼亚血吸虫病媒介福寿螺的复杂性:来自核基因组大小变异、线粒体基因组全序列及形态计量分析的见解

Complexity of schistosome vector bulinine snails in Kenya: Insights from nuclear genome size variation, complete mitochondrial genome sequence, and morphometric analysis.

作者信息

Zhang Si-Ming, Adema Coen M, Habib Mohamed R, Lekired Abdelmalek, Posavi Marijan, Laidemitt Martina R, Maina Geoffrey M, Mwangi Ibrahim N, Kinuthia Joseph M, Mutuku Martin W, Loker Eric S

机构信息

Center for Evolutionary and Theoretical Immunology, Department of Biology, University of New Mexico, Albuquerque, New Mexico, United States of America.

Medical Malacology Department, Theodor Bilharz Research Institute, Giza, Egypt.

出版信息

PLoS Negl Trop Dis. 2025 Jul 14;19(7):e0013305. doi: 10.1371/journal.pntd.0013305. eCollection 2025 Jul.

Abstract

Investigations of nuclear genome size, complete mitochondrial genome (mitogenome) sequence, and morphometrics were conducted on specimens of Bulinus snails (Gastropoda: Planorbidae) collected from 14 locations across the east coast, central Kenya, and western Kenya around the Lake Victoria region (November 2013 and January 2024). Flow cytometry measurements of DNA content (C-value) revealed unexpected variation in nuclear genome size, with diploid Bulinus africanus and B. forskalii species groups showing C-values ranging from 0.76 to 1.98 pg, while tetraploid B. truncatus had a C-value of 1.82 pg. Additionally, C-values for six B. globosus specimens from different localities ranged from 1.43 to 1.98 pg. These findings suggest that bulinine snails, particularly the B. africanus species group, have undergone genome expansion, whole genome duplication (polyploidization), or both, which have not been previously recognized. Next-generation sequencing was performed to determine and annotate 14 complete mitogenome sequences. Despite the well-conserved arrangement of protein-coding genes, two versions of mtDNA genome structure, distinguished by the tRNA-D (Asp) location, were found, designated as DCF (Asp-Cys-Phe) type (in the B. forskalii group and the B. truncatus/tropicus complex) and CF (Cys-Phe) type (in the B. africanus group). Phylogenetic analyses based on complete mtDNA sequences of bulinines from Kenya, along with cytochrome c oxidase subunit I (COX1) sequences from various localities across Africa, contributed to resolving species identities and provided further support for the presence of multiple or cryptic species in the taxon B. globosus. A landmark-based morphometric analysis was ineffective in distinguishing these species. This study reveals unexpected nuclear genome size variation, provides new mitogenome sequences, and highlights the limitations of morphological analysis. It offers valuable insights into the cytogenetics, polyploidy, genomics, taxonomy, and evolution of bulinines, which serve as intermediate hosts for schistosomes responsible for human urogenital schistosomiasis and intestinal schistosomiasis in domestic and wild mammals.

摘要

对采自肯尼亚东海岸、中部以及维多利亚湖周边肯尼亚西部14个地点的泡螺属蜗牛(腹足纲:扁卷螺科)样本进行了核基因组大小、完整线粒体基因组(线粒体基因组)序列及形态测量研究(2013年11月和2024年1月)。流式细胞术对DNA含量(C值)的测量揭示了核基因组大小存在意外变异,二倍体的非洲泡螺和福氏泡螺物种组的C值范围为0.76至1.98皮克,而四倍体的截形泡螺的C值为1.82皮克。此外,来自不同地点的6个球形泡螺样本的C值范围为1.43至1.98皮克。这些发现表明,泡螺属蜗牛,尤其是非洲泡螺物种组,经历了基因组扩张、全基因组复制(多倍体化)或两者兼而有之,而这在之前并未被认识到。进行了二代测序以确定并注释14条完整的线粒体基因组序列。尽管蛋白质编码基因的排列高度保守,但发现了两种版本的线粒体DNA基因组结构,以tRNA-D(天冬氨酸)的位置区分,分别命名为DCF(天冬氨酸-半胱氨酸-苯丙氨酸)型(在福氏泡螺组以及截形泡螺/热带泡螺复合体中)和CF(半胱氨酸-苯丙氨酸)型(在非洲泡螺组中)。基于肯尼亚泡螺属完整线粒体DNA序列以及来自非洲各地不同地点的细胞色素c氧化酶亚基I(COX1)序列进行的系统发育分析,有助于解决物种鉴定问题,并为球形泡螺分类单元中存在多个或隐性物种提供了进一步支持。基于地标点的形态测量分析无法区分这些物种。本研究揭示了意外的核基因组大小变异,提供了新的线粒体基因组序列,并突出了形态分析的局限性。它为泡螺属的细胞遗传学、多倍体、基因组学、分类学和进化提供了有价值的见解,泡螺属是导致人类泌尿生殖系统血吸虫病和家畜及野生动物肠道血吸虫病的血吸虫的中间宿主。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0d47/12274006/18b1aa79c95b/pntd.0013305.g001.jpg

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