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血浆蛋白质组学分析揭示了结节病胸部CT表型的独特特征。

Plasma Proteomic Profiling Reveals Distinct Signatures of Chest CT Phenotypes in Sarcoidosis.

作者信息

Shastry Vibha, Leach Sonia M, Elicker Brett M, Koth Laura L

机构信息

Department of Medicine, University of California, San Francisco, San Francisco, CA, 94143 United States.

Department of Microbiology and Immunology, Geisel School of Medicine, 1 Medical Center Drive, Dartmouth College, Lebanon NH, 03756, United States.

出版信息

bioRxiv. 2025 Jun 25:2025.06.24.661339. doi: 10.1101/2025.06.24.661339.

Abstract

BACKGROUND

Sarcoidosis is a granulomatous disease of unknown cause with a highly variable clinical course. The inability to predict progressive inflammation, fibrosis, or both underscores the limited understanding of the underlying molecular mechanisms.

OBJECTIVE

We aimed to identify novel protein signatures associated with distinct pulmonary phenotypes of sarcoidosis, including progressive inflammation, progressive fibrosis, and disease resolution.

METHODS

We performed the SomaScan 11K Assay to measure more than 10,000 unique human plasma proteins and compared protein expression between chest CT-defined phenotypes using principal component analysis, differential expression, correlation analysis, and gene set enrichment analysis.

RESULTS

We identified distinct proteomic signatures that differentiate progressive fibrosis from progressive nodular inflammation in sarcoidosis. Enrichment and differential expression analyses revealed that progressive fibrosis was associated with epithelial-mesenchymal transition pathways, while progressive nodular disease was linked to mTORC1 and MYC signaling, as well as metabolic activation. Additionally, expression of 44 proteins correlated moderately to strongly with thoracic lymph node enlargement, suggesting that lymph node-driven immune activity may be a major source of circulating proteomic signals.

CONCLUSIONS

This study leverages a unique longitudinal imaging approach to define extreme pulmonary phenotypes based on serial chest CT scoring, enabling the discovery of proteomic signals linked to distinct trajectories of sarcoidosis progression. Once validated, these findings could inform the development of blood-based biomarkers for disease stratification, monitoring, and therapeutic targeting in sarcoidosis.

摘要

背景

结节病是一种病因不明的肉芽肿性疾病,临床病程高度可变。无法预测进行性炎症、纤维化或两者同时出现,这突出了我们对潜在分子机制的了解有限。

目的

我们旨在识别与结节病不同肺部表型相关的新型蛋白质特征,包括进行性炎症、进行性纤维化和疾病缓解。

方法

我们进行了SomaScan 11K分析,以测量超过10,000种独特的人类血浆蛋白,并使用主成分分析、差异表达、相关分析和基因集富集分析比较了胸部CT定义的表型之间的蛋白表达。

结果

我们识别出了可区分结节病中进行性纤维化与进行性结节性炎症的独特蛋白质组特征。富集和差异表达分析显示,进行性纤维化与上皮-间质转化途径相关,而进行性结节性疾病与mTORC1和MYC信号传导以及代谢激活有关。此外,44种蛋白质的表达与胸内淋巴结肿大呈中度至强相关,这表明淋巴结驱动的免疫活动可能是循环蛋白质组信号的主要来源。

结论

本研究利用独特的纵向成像方法,基于系列胸部CT评分定义极端肺部表型,从而能够发现与结节病进展的不同轨迹相关的蛋白质组信号。一旦得到验证,这些发现可为开发用于结节病疾病分层、监测和治疗靶点的血液生物标志物提供依据。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8214/12262719/424083cbb6eb/nihpp-2025.06.24.661339v1-f0001.jpg

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