Valcárcel Gemma, Lazarenkov Aleksey, López-Rubio Anna V, Berenguer Clara, Calafell-Segura Josep, Rodríguez-Ubreva Javier, Ballestar Esteban, Sardina José Luis
Epigenetic Control of Haematopoiesis Group, Josep Carreras Leukaemia Research Institute (IJC), Campus Can Ruti, 08916 Badalona, Spain.
Doctoral Program in Biomedicine, Universitat de Barcelona (UB), 08036 Barcelona, Spain.
Sci Adv. 2025 Jul 18;11(29):eadt1644. doi: 10.1126/sciadv.adt1644. Epub 2025 Jul 16.
Immune cell differentiation and activation are associated with widespread DNA methylation changes; however, the causal relationship between these changes and their impact in shaping cell fate decisions still needs to be fully elucidated. Here, we conducted a genome-wide analysis to investigate the relationship between DNA methylation and gene expression at gene regulatory regions in human immune cells. By using CRISPR-dCas9-TET1 and -DNMT3A epigenome editing tools, we successfully established a cause-and-effect relationship between the DNA methylation levels of the promoter of the interleukin-1 receptor antagonist () gene and its expression. We observed that modifying the DNA methylation status of the promoter is sufficient to alter human myeloid cell fate and change the cellular response to inflammatory and pathogenic stimuli. Collectively, our findings demonstrate the potential of targeting specific DNA methylation events to directly modulate immune and inflammatory responses, providing a proof of principle for intervening in a broad range of inflammation-related diseases.
免疫细胞的分化和激活与广泛的DNA甲基化变化有关;然而,这些变化与其在塑造细胞命运决定中的影响之间的因果关系仍有待充分阐明。在这里,我们进行了全基因组分析,以研究人类免疫细胞基因调控区域的DNA甲基化与基因表达之间的关系。通过使用CRISPR-dCas9-TET1和-DNMT3A表观基因组编辑工具,我们成功地建立了白细胞介素-1受体拮抗剂()基因启动子的DNA甲基化水平与其表达之间的因果关系。我们观察到,改变启动子的DNA甲基化状态足以改变人类髓样细胞命运,并改变细胞对炎症和致病刺激的反应。总的来说,我们的研究结果证明了靶向特定DNA甲基化事件直接调节免疫和炎症反应的潜力,为干预广泛的炎症相关疾病提供了原理证明。