软选择清除的特征在埃及伊蚊中占主导地位。

Signatures of soft selective sweeps predominate in the yellow fever mosquito .

作者信息

Ketchum Remi N, Matute Daniel R, Schrider Daniel R

机构信息

Department of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, 27514-2916, United States of America.

Department of Biology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, 27514-2916, United States of America.

出版信息

bioRxiv. 2025 Jul 10:2025.07.06.663360. doi: 10.1101/2025.07.06.663360.

Abstract

The mosquito is a vector for human arboviruses and zoonotic diseases, such as yellow fever, dengue, Zika, and chikungunya, and as such poses a serious threat to public health. Understanding how adapts to environmental pressures-such as insecticides-is critical for developing effective mitigation strategies. However, most traditional methods for detecting recent positive selection search for signatures of classic "hard" selective sweeps, and to date no studies have examined soft sweeps in This represents a significant limitation as this is vital information for understanding the pace at which an organism can adapt-populations that are able to immediately respond to new selective pressures are expected to adapt more often via standing variation or recurrent adaptive mutations (both of which may produce soft sweeps) than via mutations (which produces hard sweeps). To this end, we used a machine learning method capable of detecting hard and soft sweeps to investigate positive selection in population samples from Africa and the Americas. Our results reveal that soft sweep signatures are significantly more common than hard sweeps in all population samples, including those that have experienced population bottlenecks, which may imply that this species can respond quickly to environmental stressors. This is a particularly concerning finding for vector control methods that aim to eradicate through the use of insecticides. We highlight genes under selection that include both well-characterized and putatively novel insecticide resistance genes. These findings underscore the importance of using methods capable of detecting and distinguishing hard and soft sweeps, implicate soft sweeps as a major selective mode in and highlight genes that may aid in the control of populations.

摘要

蚊子是人类虫媒病毒和人畜共患病的传播媒介,如黄热病、登革热、寨卡病毒病和基孔肯雅热,因此对公共卫生构成严重威胁。了解蚊子如何适应环境压力(如杀虫剂)对于制定有效的缓解策略至关重要。然而,大多数检测近期正选择的传统方法都在寻找经典“硬”选择性清除的特征,迄今为止,尚无研究在蚊子中检测软清除。这是一个重大限制,因为这是了解生物体适应速度的关键信息——能够立即对新选择压力做出反应的种群预计更常通过现有变异或反复适应性突变(这两者都可能产生软清除)而非通过新发突变(产生硬清除)来适应。为此,我们使用了一种能够检测硬清除和软清除的机器学习方法,来研究来自非洲和美洲的蚊子种群样本中的正选择。我们的结果表明,在所有种群样本中,包括那些经历过种群瓶颈的样本,软清除特征都比硬清除显著更常见,这可能意味着该物种能够快速应对环境压力源。对于旨在通过使用杀虫剂根除蚊子的病媒控制方法来说,这是一个特别令人担忧的发现。我们突出了正在接受选择的基因,其中包括特征明确的和可能是新的抗杀虫剂基因。这些发现强调了使用能够检测和区分硬清除和软清除的方法的重要性,表明软清除是蚊子中的一种主要选择模式,并突出了可能有助于控制蚊子种群的基因。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3632/12265571/e0e0348aa457/nihpp-2025.07.06.663360v1-f0001.jpg

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