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对一种源自生物结皮的产油微藻WL1菌株对氮素缺乏及恢复的分子响应的基因组学和转录组学见解

Genomic and transcriptomic insights into the molecular responses of a biocrust-derived oleaginous microalga sp. WL1 to nitrogen depletion and recovery.

作者信息

Rao Xiaolan, Liang Wensheng, Jing Xin, Liu Chang, Li Jiahong, Liu Limei, Gao Xiang

机构信息

State Key Laboratory of Biocatalysis and Enzyme Engineering, School of Life Sciences, Hubei University, Wuhan 430062, China.

College of Food Science and Engineering, Shaanxi University of Science and Technology, Xi'an 710021, China.

出版信息

Synth Syst Biotechnol. 2025 Jun 14;10(4):1160-1171. doi: 10.1016/j.synbio.2025.06.004. eCollection 2025 Dec.

DOI:10.1016/j.synbio.2025.06.004
PMID:40678147
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12269273/
Abstract

Microalgae surviving in extreme conditions evolve tolerance mechanisms to diverse environmental stresses. Environmental nitrogen limitation or nitrogen starvation poses a significant threat to the growth of microalgae, but it is an effective factor in inducing lipid accumulation in many microalgal species. In this study, we report the genome sequence of a promising oil-producing strain, sp. WL1, which is capable of resisting long-term nitrogen starvation and responds rapidly to nitrogen recovery. Its genome comprises 127 Mb of nuclear DNA and 17,392 protein-coding genes. Comparative genomic and transcriptomic analyses identified a group of genes involved in nitrate metabolism and lipid accumulation. Heterologous expression of three candidate genes in the model cyanobacterium sp. PCC 6803 demonstrated their effects on restoring the cellular chlorophyll upon nitrogen recovery. Our results provide novel insights into the molecular basis of metabolic shifts in response to nitrogen starvation and recovery in microalgae.

摘要

在极端条件下生存的微藻会进化出应对各种环境压力的耐受机制。环境中的氮限制或氮饥饿对微藻的生长构成重大威胁,但却是诱导许多微藻物种脂质积累的一个有效因素。在本研究中,我们报告了一种有前景的产油菌株—— sp. WL1的基因组序列,该菌株能够抵抗长期的氮饥饿,并对氮恢复迅速做出反应。其基因组包含127 Mb的核DNA和17392个蛋白质编码基因。比较基因组学和转录组学分析确定了一组参与硝酸盐代谢和脂质积累的基因。在模式蓝藻sp. PCC 6803中对三个候选基因进行异源表达,证明了它们在氮恢复时对恢复细胞叶绿素的作用。我们的结果为微藻响应氮饥饿和恢复时代谢转变的分子基础提供了新的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1147/12269273/2805d2464f49/gr6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1147/12269273/0e6add4c63ad/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1147/12269273/3745c482b8b7/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1147/12269273/69294c839235/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1147/12269273/ff0aa34d1522/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1147/12269273/659dd5d35379/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1147/12269273/2805d2464f49/gr6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1147/12269273/0e6add4c63ad/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1147/12269273/3745c482b8b7/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1147/12269273/69294c839235/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1147/12269273/ff0aa34d1522/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1147/12269273/659dd5d35379/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1147/12269273/2805d2464f49/gr6.jpg

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本文引用的文献

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Microalgal-bacterial treatment of ice-cream wastewater to remove organic waste and harvest oil-rich biomass.利用微藻-细菌处理冰淇淋废水,以去除有机废物并收获富含油的生物质。
Environ Sci Pollut Res Int. 2024 May;31(21):31646-31655. doi: 10.1007/s11356-024-33472-x. Epub 2024 Apr 26.
3
Fatty acid de novo biosynthesis in plastids: Key enzymes and their critical roles for male reproduction and other processes in plants.
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Plant Physiol Biochem. 2024 May;210:108654. doi: 10.1016/j.plaphy.2024.108654. Epub 2024 Apr 22.
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Exploitation of inland salt lake water by dilution and nutrient enrichment to cultivate sp. WL1 (Eustigmatophyceae) for biomass and oil production.通过稀释和营养富集利用内陆盐湖湖水来培养WL1藻种(真眼点藻纲)以生产生物质和油脂。
Biotechnol Rep (Amst). 2023 Dec 11;41:e00823. doi: 10.1016/j.btre.2023.e00823. eCollection 2024 Mar.
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The genomes of Vischeria oleaginous microalgae shed light on the molecular basis of hyper-accumulation of lipids.油性微藻 Vischeria 的基因组揭示了脂质超积累的分子基础。
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