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通过工程化血红素蛋白对单取代卡宾进行生物催化C(sp)-H插入反应的计算机理研究。

Computational Mechanistic Investigation of Biocatalytic C(sp)-H Insertions with Monosubstituted Carbenes via Engineered Heme Proteins.

作者信息

Chu Jia-Min, McGuire Emily, Zhang Yong

机构信息

Department of Chemistry and Chemical Biology, Stevens Institute of Technology, 1 Castle Point Terrace, Hoboken, New Jersey 07030, United States.

出版信息

ACS Omega. 2025 Jul 5;10(27):29365-29373. doi: 10.1021/acsomega.5c02412. eCollection 2025 Jul 15.

Abstract

A recent experimental study by Arnold's research group ( , , 67-72) showed the engineered cytochrome P450 enzyme (cytochrome P411), with acceptor-only carbenes, offers a new sustainable alternative to metal catalysts that have traditionally dominated C-H functionalization. However, there is still no detailed mechanistic understanding thus far. In this study, a series of DFT calculations were performed to uncover the basic reaction mechanism as well as insights into the observed carbene substituent effect behind this novel reaction. Computational results showed that the reaction follows the radical hydrogen atom transfer (HAT) mechanism, which is consistent with experimental work. The electron-withdrawing carbene substituent together with the negatively charged axial ligand plays an important role in steering the reaction toward this mechanism. The more favorable experimental reactivity with the carbene derived from ethyl diazoacetate than diazoacetone was also reproduced. It was found to originate from the additional hydrogen bonds with the carboxylate substituent of the carbene, which further stabilizes the transition state toward a more facile HAT reaction. This quantum chemical study provides useful molecular-level insights that help shed light on the future design of the biocatalysts to contribute to the development of efficient, sustainable C-H functionalization approaches.

摘要

阿诺德研究小组最近的一项实验研究(……,67 - 72)表明,带有仅含受体卡宾的工程化细胞色素P450酶(细胞色素P411),为传统上主导C - H官能化的金属催化剂提供了一种新的可持续替代方案。然而,到目前为止仍没有详细的机理理解。在本研究中,进行了一系列密度泛函理论(DFT)计算,以揭示基本反应机理,并深入了解这种新反应背后观察到的卡宾取代基效应。计算结果表明,该反应遵循自由基氢原子转移(HAT)机理,这与实验工作一致。吸电子卡宾取代基与带负电荷的轴向配体共同在引导反应走向该机理方面发挥重要作用。还重现了与重氮乙酸乙酯衍生的卡宾相比,重氮丙酮具有更有利的实验反应活性。发现这源于与卡宾的羧酸盐取代基的额外氢键,这进一步使过渡态稳定,从而有利于更易发生的HAT反应。这项量子化学研究提供了有用的分子水平见解,有助于为生物催化剂的未来设计提供思路,以促进高效、可持续的C - H官能化方法的发展。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e133/12268725/0e49d69b293b/ao5c02412_0001.jpg

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