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坦桑尼亚北部慢性腿部溃疡患者铜绿假单胞菌分离株中与全球高风险序列类型相关的碳青霉烯酶基因分布

Distribution of Carbapenemase Genes Associated With Global High-Risk Sequence Types in Pseudomonas aeruginosa Isolates From Chronic Leg Ulcer Patients in Northern Tanzania.

作者信息

Sengeruan Lameck Pashet, Omar Omar Said, Kanje Livin E, Kimu Patrick, Wadugu Boaz, van Zwetselaar Marco, Kumburu Happiness, Sonda Tolbert, Chugulu Samwel, Mshana Jere

机构信息

Kishapu District Council, Shinyanga, Tanzania.

Bioinformatics Unit, Kilimanjaro Clinical Research Institute, Moshi, Tanzania.

出版信息

Int Wound J. 2025 Aug;22(8):e70735. doi: 10.1111/iwj.70735.

Abstract

Carbapenem-resistant Pseudomonas aeruginosa exacerbates the healing of chronic leg ulcer among patients. Further, production and dissemination of the carbapenemase genes are associated with P. aeruginosa high-risk sequence types. Hence, understanding the population structure of these organisms is essential for healthcare personnel to establish effective leg ulcers care management, prevention interventions and control strategies particularly in regions with poor diagnosis. A cross-sectional study included inpatients and outpatients with chronic leg ulcers was conducted from August 2022 to April 2023 in 2 hospitals in Kilimanjaro region. Antimicrobial susceptibility testing was done by using the disc diffusion method. Further, whole genome sequencing was performed to study the genotypic characteristics of the isolates. Ten of 92 participants were positive for genus Pseudomonas isolates upon culture during the study period. Ambler class D carbapenemase genes were carried in all 8 isolates, and class B ( , ) in 2 isolates. The tree topology showed that all 8 P. aeruginosa isolates that carried any of the Ambler carbapenemase genes were in one clade with the reference strain PAO1. This study sheds light on different carbapenemase gene types (VIM-2, DIM-1, and OXA-types) harboured in the denominated global high-risk and endemic sequence types in 2 tertiary hospitals in northern Tanzania, alarming the possibility of a prolonged healing process and a high risk of treatment failure among patients because of the increased spread of antimicrobial resistance. Further, the findings underscore the need for antimicrobial surveillance to guide healthcare personnel in managing chronic leg ulcers for better patient outcomes and the implementation of antimicrobial stewardship programs.

摘要

耐碳青霉烯类铜绿假单胞菌会加剧患者慢性腿部溃疡的愈合。此外,碳青霉烯酶基因的产生和传播与铜绿假单胞菌的高风险序列类型有关。因此,了解这些微生物的种群结构对于医护人员建立有效的腿部溃疡护理管理、预防干预措施和控制策略至关重要,尤其是在诊断水平较差的地区。2022年8月至2023年4月,在乞力马扎罗地区的2家医院对患有慢性腿部溃疡的住院患者和门诊患者进行了一项横断面研究。采用纸片扩散法进行药敏试验。此外,还进行了全基因组测序以研究分离株的基因型特征。在研究期间,92名参与者中有10名在培养时铜绿假单胞菌属分离株呈阳性。所有8株分离株均携带安布勒D类碳青霉烯酶基因,2株携带B类( , )。树形拓扑结构显示,所有8株携带任何一种安布勒碳青霉烯酶基因的铜绿假单胞菌分离株与参考菌株PAO1处于一个进化枝中。本研究揭示了坦桑尼亚北部2家三级医院中命名的全球高风险和地方流行序列类型中存在的不同碳青霉烯酶基因类型(VIM-2、DIM-1和OXA型),警示由于抗菌药物耐药性传播增加,患者可能会出现愈合过程延长和治疗失败的高风险。此外,研究结果强调了进行抗菌监测的必要性,以指导医护人员管理慢性腿部溃疡,从而获得更好的患者治疗效果,并实施抗菌药物管理计划。

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